Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1002 ATGAAGCCAGAGTTGTACGAAATCTCCGACGACGAATGGGAGAATCATTCCTTCAAACCCTCGCGAGTCCTCAAGCGGCCTCGCACTTCGTCTCCTCCTCCGCCGCCCATCGAATCCTTCGCTTACAACACCTCCAAGGCCGCCGACGTTTCAAGCGAAAACGACAGCGACTGCGTCGAAATCGCGGCGGCGCCGCCGACCGAAGACGCCGATTTTCGCGAGTTTCTCGACGACCTCGAGGACGCTGACGTCAACGACGGACCGGCGCCTGCGTCCCGAGGCCGGAGGTTCATAATCGACGACGACGACGAGGACGCCGCCGAGGAGAAGGACGGACACGCGGCGGAATTGTACGAGGTGTTGTCGAGCGAGGTGGAGGAGGAAGAGGAAGTTGAAGAGTTGAACGAGAATGATGTCGTTGGAAAGGCTTTGCATAAGTGCGCGCGAATCTCTGCGGAGTTGAAGGGCGAACTCTTTGGTTCTTCAGGGACCGCTTGTGAGAGGTATTCCGAGGTGGAATCTTCGTCAGTGAGGATCGTGACTCAAGAGGATGTTGACGTTGCGTGCGTGTCTGAGGAGGATTCGGATTTTCAGCCTCTGCTCAAGCCGTATCAGTTGGTTGGTGTCAATTTTTTGCTTCTCTTGTATCGGAAGGGGATTGGAGGAGCCATATTGGCAGATGAAATGGGTCTTGGCAAAACAATTCAGGCTATCACATATTTAACTTTGTTGAAACACTTGCACAATGATTCTGGTCCACATCTTATAGTATGTCCTGCTTCTGTTTTGGAAAACTGGGATAGGGAACTAAAAAGGTGGTGTCCGTCCTTTTCTGTTCTTCAATATCACGGGGCTGGGCGTGCAGCATATTGCAAGGAGTTGAATTCCCTGTCCAAGGCGGGATTGCCTCCTCCATTTAATGTTCTTCTTGTGTGTTATTCACTTTTTGAACGACACAGTGCACAGCAGAAAGATGATCGCAAAATCTTGAAGCGGTGGCGGTGGAGCTGTGTGCTGATGGATGAGGCACATGCTTTGAAGGACAAAAATAGCTTTAGGTGGAAAAATCTGATGTCTGTTGCACGAAATGCGAACCAACGCTTGATGCTGACAGGGACTCCACTTCAGAATGATCTACACGAGTTATGGTCATTGTTGGAGTTTATGCTGCCTGATATTTTTGCTTCTGAAGATGTTGACCTTAAAAAGTTACTAAATGCTGAAGATAGAGATTTAATTGGTCGTATGAAGTCCATCTTAGGGCCATTTATTTTGCGGCGACTGAAATCTGATGTTATGCAACAACTTGTTCCAAAAATACAGCAGGTTGAATATGTTATAATGGAAAGGCAGCAGGAAACTGCTTACAAGGAAGCCATTGAAGAGTATCGTGCTGTTTCACAAGCTCGGATGGCAAAATGTTCCGAGCTTAATACAAAAAGTGTTCTTGAAGTTCTTCCTCGACGACAGATAAATAACTATTTTGTTCAGTTCCGCAAGATTGCAAACCATCCCTTGTTAATAAGGCGAATCTACAATGATGAGGATGTCATTCGCTTTGCTAGGAAGCTACATCCAGTAGGTGCTTTTGGTTTTGAATGTACTTTGGACAGAGTTATAGAGGAGCTTAAAAATTACAACGACTTCTCTATTCACCGGCTTTTACTTCATTATGGTGTCAATGATAGAAAGGGGATCCTTCCAGATAAGCATGTTATGCTTTCTGCAAAATGTCGGGCCTTAGCAGAACTTCTTCCCTCACTAAAGGAGGGTGGTCATCGAGCCTTGATCTTTAGTCAATGGACTTCAATGCTTGACATATTGGAGTGGACTTTGGATGTCATTGGATTGACCTATAGACGGCTTGATGGAAGTACACAGGTTGCAGAAAGGCAAACAATAGTTGATACGTTCAACAATGATACTTCAATATTTGCGTGCTTACTTTCCACGAGAGCTGGTGGACAGGGCTTAAACTTAACAGGAGCAGATACAGTTGTAATTCATGACATGGATTTTAACCCACAGATAGACAGACAGGCTGAAGATCGTTGCCATCGAATTGGTCAAACAAAACCTGTAACCATATATCGTCTGGTGACTAAGGGAACAGTTGATGAAAATGTGTACGAGATTGCAAAAAGAAAGCTAGTATTAGATGCTGCTGTTCTTGAGTCCATGGAGGAGATTAATGAAGGTAACATGCCCGAGAAGACCATGGGAGAGATATTGTCCGCAATTTTGTTGAGCTAA 2253 0.4581 MKPELYEISDDEWENHSFKPSRVLKRPRTSSPPPPPIESFAYNTSKAADVSSENDSDCVEIAAAPPTEDADFREFLDDLEDADVNDGPAPASRGRRFIIDDDDEDAAEEKDGHAAELYEVLSSEVEEEEEVEELNENDVVGKALHKCARISAELKGELFGSSGTACERYSEVESSSVRIVTQEDVDVACVSEEDSDFQPLLKPYQLVGVNFLLLLYRKGIGGAILADEMGLGKTIQAITYLTLLKHLHNDSGPHLIVCPASVLENWDRELKRWCPSFSVLQYHGAGRAAYCKELNSLSKAGLPPPFNVLLVCYSLFERHSAQQKDDRKILKRWRWSCVLMDEAHALKDKNSFRWKNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFMLPDIFASEDVDLKKLLNAEDRDLIGRMKSILGPFILRRLKSDVMQQLVPKIQQVEYVIMERQQETAYKEAIEEYRAVSQARMAKCSELNTKSVLEVLPRRQINNYFVQFRKIANHPLLIRRIYNDEDVIRFARKLHPVGAFGFECTLDRVIEELKNYNDFSIHRLLLHYGVNDRKGILPDKHVMLSAKCRALAELLPSLKEGGHRALIFSQWTSMLDILEWTLDVIGLTYRRLDGSTQVAERQTIVDTFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVLESMEEINEGNMPEKTMGEILSAILLS 750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1002 750 Pfam Helicase conserved C-terminal domain 577 689 IPR001650 -
Aed11g1002 750 SMART helicmild6 606 689 IPR001650 -
Aed11g1002 750 CDD SF2_C_SNF 567 700 - -
Aed11g1002 750 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 214 392 IPR014001 -
Aed11g1002 750 Gene3D - 550 748 IPR027417 -
Aed11g1002 750 MobiDBLite consensus disorder prediction 19 57 - -
Aed11g1002 750 Pfam SNF2-related domain 221 507 IPR000330 GO:0005524|GO:0140658
Aed11g1002 750 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 333 730 IPR027417 -
Aed11g1002 750 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY A CONTAINING DEAD/H BOX 1 41 748 - -
Aed11g1002 750 PANTHER SNF2/RAD54 HELICASE FAMILY 41 748 - -
Aed11g1002 750 Gene3D - 9 176 IPR036661 GO:0016705
Aed11g1002 750 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 580 747 IPR001650 -
Aed11g1002 750 Gene3D - 177 451 IPR038718 -
Aed11g1002 750 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 192 427 IPR027417 -
Aed11g1002 750 CDD DEXHc_Snf 201 394 - -
Aed11g1002 750 SMART ultradead3 197 402 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1002 Aed-Chr11 15862931 15869634 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1002 222 728 RAD5 or RAD16-like Gene Family AT5G22750 26.997 1.06e-47 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Aed11g1002 SNF2_N 2e-55 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1002 K14439 - gmx:100806323 1342.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1002 11 15862931 15869634 Aed11g1002 11 15862931 15869634 ECH