Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1000 ATGTATATGTATGCAGATCCAGATGCTGAGGTGATAGCACTATCTCCAAAGACACTAATGGCAACAAACAGGTTCATATGTGAAGTGTGCAACAAAGGGTTCCAAAGAGAGCAAAACCTACAGCTACACAGAAGAGGACACAATTTGCCTTGGAAGCTAAAGCAAAAGAGTAACAAAGAAGTGCCAAAGAGAAAGGTTTATCTGTGTCCTGAGCCCACATGTGTTCATCATGACCCTTCAAGGGCCCTTGGAGACCTCACTGGCATCAAAAAACACTTCTCTCGCAAACATGGTGAAAAAAAATGGAAGTGTGACAAATGCTCCAAAAAATATGCTGTTCAATCTGATTGGAAGGCTCACTCCAAAACCTGTGGCACTAGAGAGTATAGATGTGACTGTGGCACCCTCTTCTCCAGGCGTGACAGTTTCATAACTCATAGGGCATTTTGTGATGCACTAGCACATGAGAGTGCAAGACACCCTTCAAACCTGAACCCTTTGGGGAATCATCTCTATGGCACAAACCAGCACATGAGCCTAGGCCTTGGTGCACATCAACTTCAGAACCACCAAGGAGCCACTAACAGCATATTGAGCCTTGGAAGTGCACCAAAGTTTGAGCACTTGATCTCACCAAATCTGCACCACTCATCATCATTTGGAGTGCACTCACCACCACAATCATCATCATTCTTCATGAATGATCCAAACCAAGCATTTCATCAAGACCTCCAATCTCAGAACCAAGGACACTTATTCTCAAACAAGCAACTCCATGGTCTCATGCAACTCCCTGATCTTCAAGGAACCACAACCACTAATAACAACAACAACAACTCCACTAATTCTGCTTCATCAGTGTCTGCTTCTGCTAACAACAACAACAACACCAATCTCTTCAACCTAAGCTTCTTTCCCAACACCAATGATCATCAATTCAGCAACATAAGTAGTGGAGGTGGTAATAACAACAATAACCACCAAGGAATAACAGCAACACTCTACAGTACTAATGATAGCCCTGTGAGTAACCACCACCACCAAGTTGGTTCAAACTTGTCTTCACTCTTTGGAAACTCATCAATGTTGCAACAAGATAGCATGTCTCCTCACATGTCAGCCACTGCATTGCTTCAGAAAGCTGCTCAAATGGGTTCAACCACAACCATCAATGCCTCTCATCATCATCATCAGTTAGAGAATAATGATCATCATAACCACAATAACCACATACGTGGGTTGATGAATTCTCTTGCTAATGGAAACGCTGCTTCTTCCATGTTTGGGAACAATATCAATGTGAAAGGGAACGAAAACAACCTTGGCCAGTTTCACAACATGGTGGAGGAGGAGCATAATAATAAGAAGATTATGTCACAAAACAACAACAACAACAACAACAACCTTGGCTTGTGCTTTGGAGGGTCTGATAAGTTGACCTTGGACTTTTTGGGTGTTGGAGGAATGGTGAGGAACATCAACAACAATGGAGGAGGCTTTTCACAACAACAACAACAACACTCCATGGGAACTATGATCAGCCCCTTGGATCCTAAATTGGAATCATCAGCACAAGGAAACCACCAACACTATGGAACCTCAACACTCTAA 1611 0.4289 MYMYADPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSNKEVPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAHESARHPSNLNPLGNHLYGTNQHMSLGLGAHQLQNHQGATNSILSLGSAPKFEHLISPNLHHSSSFGVHSPPQSSSFFMNDPNQAFHQDLQSQNQGHLFSNKQLHGLMQLPDLQGTTTTNNNNNNSTNSASSVSASANNNNNTNLFNLSFFPNTNDHQFSNISSGGGNNNNNHQGITATLYSTNDSPVSNHHHQVGSNLSSLFGNSSMLQQDSMSPHMSATALLQKAAQMGSTTTINASHHHHQLENNDHHNHNNHIRGLMNSLANGNAASSMFGNNINVKGNENNLGQFHNMVEEEHNNKKIMSQNNNNNNNNLGLCFGGSDKLTLDFLGVGGMVRNINNNGGGFSQQQQQHSMGTMISPLDPKLESSAQGNHQHYGTSTL 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1000 536 SMART c2h2final6 25 47 IPR013087 -
Aed11g1000 536 SMART c2h2final6 67 97 IPR013087 -
Aed11g1000 536 SMART c2h2final6 102 122 IPR013087 -
Aed11g1000 536 Pfam Zinc-finger double-stranded RNA-binding 25 47 IPR022755 -
Aed11g1000 536 Gene3D Classic Zinc Finger 80 159 - -
Aed11g1000 536 ProSiteProfiles Zinc finger C2H2 type domain profile. 25 47 IPR013087 -
Aed11g1000 536 SUPERFAMILY beta-beta-alpha zinc fingers 24 122 IPR036236 -
Aed11g1000 536 MobiDBLite consensus disorder prediction 266 292 - -
Aed11g1000 536 Gene3D Classic Zinc Finger 6 71 - -
Aed11g1000 536 ProSitePatterns Zinc finger C2H2 type domain signature. 27 47 IPR013087 -
Aed11g1000 536 PANTHER FINGER PROTEIN PCP1-LIKE 5 514 - -
Aed11g1000 536 MobiDBLite consensus disorder prediction 496 536 - -
Aed11g1000 536 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 5 514 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1000 Aed-Chr11 15847599 15851307 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1000 8 498 IDZ Gene Family AT2G02070 44.872 2.91e-116 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed11g1000 zf-C2H2_jaz 3.2e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1000 K25870 - gmx:102663407 699.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1000 11 15847599 15851307 Aed11g1000 11 15847599 15851307 ECH