Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g0998 ATGTGTGTGTGTGTGAATGCAGATCCAGATGCTGAGGTGATAGCACTATCTCCAAAGACACTAATGGCAACAAACAGGTTCATATGTGAAGTGTGCAACAAAGGGTTCCAAAGAGAGCAAAACCTACAGCTACACAGAAGAGGACACAATTTGCCTTGGAAGCTAAAGCAAAAGAGTAACAAAGAAGTGCCAAAGAGAAAGGTTTATCTGTGTCCTGAGCCCACATGTGTTCATCATGACCCTTCAAGGGCCCTTGGAGACCTCACTGGCATCAAAAAACACTTCTCTCGCAAACATGGTGAAAAAAAATGGAAGTGTGACAAATGCTCCAAAAAATATGCTGTTCAATCTGATTGGAAGGCTCACTCCAAAACCTGTGGCACTAGAGAGTATAGATGTGACTGTGGCACCCTCTTCTCCAGTAACTATAGTGAGGAAAAGGGCTTGGATGCTTTCTTTTTTCTATTGAGTTTGGCTTCCTTCCAATTCATTCAGATTCTGTCCTCTCTTTCCCTCTCTCGTATGGTTTCCTTTGTCATCTTTCTCTTATATTTAGCACAGTGGCCAAGTGAGGTGTAA 579 0.4266 MCVCVNADPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSNKEVPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSSNYSEEKGLDAFFFLLSLASFQFIQILSSLSLSRMVSFVIFLLYLAQWPSEV 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g0998 192 SMART c2h2final6 27 49 IPR013087 -
Aed11g0998 192 SMART c2h2final6 69 99 IPR013087 -
Aed11g0998 192 SMART c2h2final6 104 124 IPR013087 -
Aed11g0998 192 ProSiteProfiles Zinc finger C2H2 type domain profile. 27 49 IPR013087 -
Aed11g0998 192 Gene3D Classic Zinc Finger 82 150 - -
Aed11g0998 192 Gene3D Classic Zinc Finger 6 74 - -
Aed11g0998 192 ProSitePatterns Zinc finger C2H2 type domain signature. 29 49 IPR013087 -
Aed11g0998 192 SUPERFAMILY beta-beta-alpha zinc fingers 26 124 IPR036236 -
Aed11g0998 192 Pfam Zinc-finger double-stranded RNA-binding 27 49 IPR022755 -
Aed11g0998 192 PANTHER PROTEIN INDETERMINATE-DOMAIN 6, CHLOROPLASTIC 6 141 - -
Aed11g0998 192 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 6 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g0998 Aed-Chr11 15834663 15835461 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g0998 8 140 IDZ Gene Family AT2G02070 93.233 6.30e-90 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed11g0998 zf-C2H2_jaz 8.6e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g0998 K25870 - fve:101308078 278.87