Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g0985 ATGGAAAAGGTGGCTCCGCCTCCGATTCTGATGCACCGGAAGCGCGATCTGTCGTACGGCGTCGTTCCAGCGGGTCCGAGCGAGACCTGGAGGTGGGACTGGGACAGCGTGCGTTTTGCCGGGAAACCACCACCTCCTTCCCAAAACGACGACGTCGTTTTCGAGGAGGCGAGTGTTGCGGTGCCGCCGCTTCAGTTAAACCTCGGCGGCGGTGGTGGAAGATTGAACAACAGCAACAGCGGAAACAGCAACAAGAGAGTGAGGTCGGGGTCTCCGGGAAGCGGAACCGGAACAGCGTCGTATCCGATGTGCCAGGTGGACAACTGCAGAGAGGATCTGTCGAAGGCGAAGGACTATCACCGGAGGCACAAGGTGTGTGAGGCTCACAGCAAAGCCTCCAAGGCGCCGCTCGCGAATCAAATGCAACGGTTCTGCCAGCAGTGCAGCAGGTTCCACCCGCTCTCCGAGTTCGACGAGGGGAAGCGGAGCTGTCGCCGGAGACTCGCCGGACACAACCGCCGCCGCAGGAAGACGCAGCCCGAGGATGTCACTTCCGCGACTCCCGCTCCCGCGGGGGCGGCCGCCGCGAATTTGGAAATCTTCAACTTGTTGACTGCCATCGCTGGAGCTTCGCAGGGAAAATTTGAGGAAAAAAGGTCCCAAGTACCGGATAGAGAGCAGCTTGTTCAGATTCTCAATAGGATACCTTTGCCTGCAGATCTTGCAACCAAGTTGCTGGATGCTGGTAGTGGTAATGTTAATGGGAAAAAAGATCATGTGCAATTGCAGACTCCATCCTGCTATCAACGTCATGACCAACTGAACCACACCCCGGCTGCCCCGTCAACTATGGACTTGCTTGGTGTTCTTTCCACCACTCTTTCTGGGGGGTCTGCCCCTGTTGCAAGTGCGTCGCCCTCTCAAAACCGCAGCTGCAGCAGTGATGATGGCAGTGACAAGTCTAGGAATAGTGCTGCTGACCAGATGAGACAACAACAGCAGTTCTTTTCAGTTGGTGGAGAAAGAAGCAGTAGCAGTTCCCAGTCTCCAGTCGAAGATTCAGATTGTCAGGAGGATGTTCGAGTTAATTTGCCGCTGCAACTCTTTAGCTCCTCCCCAGAAGATGACAGCCTGCCTAAACTAGCATCTTCGAGAAAGTATTTCTCATCTGACAGTAGTAACCCTGCTGAAGATAGGTCCCCATCATCTTCTCCTCCTGTTGTGGAGATGCAGTTTGATTTGCAGGGTGGGGCTAGAGGTCTCAAGCCAGAGAGTATATCCTCTGGAAGAGGAGTTCATGCAAATAAGGAAGCTAGCCAAAGTCATAGTTGTAATATCTCTCTTGATCTGTTTAAAGGGTCAAATAACAGGATCCAACAACCTAGTTCACTTCAAAGTGTTCCATTTCAAGCTGGGTATACATCTTCGGGCTCTGATCATTCACCTCCCAGTTTGAATTCAGATTCTCAGGATCGCACTGGGAGAATAATGTTTAAACTATTTGACAAGCATCCCAGCCATTTCCCAGGAACACTGCGTGCACAGATTTACAATTGGCTATCTAATAGGCCATCAGACATGGAGAGCTACATACGGCCTGGTTGTGTGGTCCTATCAATTTATGCCTCAATGTCTTCTGCTGACTGGGAGAAACTAGAAGAAAACTTCCTTCAACATGTTCATTCTTTAATTCAAAATTCAGATTCCAATATTTGGAGAAATGGAAGGTTTCTGGTTCATTCTGGCAGTCAGTTAGTTTCACACAAAGATGGGAAGATACGCATATGCAAACCATGGAGAACATGGAAGTCGCCAGAGTTGATATCTGTGTCCCCTTTGGCAATTGTTAGTGGACAGGAAACCTCTATTTCATTGAAGGGTAGAAACCTGTCAACTCCTGGCACAAAGATTCACTGTACAGGTACTGGTTCTTACACATCAGTAGAAGTCATAGGATCTACATATTCTGGTGTGATTTATGATAAGATAAAGTTGAGTGGTTTTAAAGTTCAGGATGTATCGCCTGGTGTTCTGGGTCGCTGTTTTATTGAGGTTGAAAATGGTTTCAAGGGTAATAGTTTTCCCGTGATAATAGCTGATGAGACCATTTGCAAGGAATTGATACCACTTGAGTCTGAATTTGATGAGGTGGAAAAAATATGTGATGCCATTTCAGAGGAGCATGAACATCATTTTGGAAGGCCGAGATCAAGAGAGGAGGCTTTGCACTTTCTGAATGAGCTTGGCTGGCTGTTCCAAAGAGAAAGATTCTCATATGTGCATGAGGTTCCATATTATTCGCTTGACAGGTTCAAATTTGTACTCACATTTGCTGTGGAAAGAAACTGTTGCATGCTAGTCAAAACCCTTCTGGATGTGATGGTAGATAAGCACTTGCGAGGGGAATGGTTGTCAACAGGGTTGGTGGAGATGCTAAATGCAATCCAACTCTTAAATAGAGCAGTGAAAAGAAAGTACATAGGCATGATTGATTTGCTCATCCACTATTCTATACCGTGCCAAAATGGTACATCCAGGAAATATGCATTTCCACCGAATCTTGAGGGTCCTGGTGGTATTACACCCTTGCACTTGGCAGCATGCACATCTAGTTCTGAGAGTGTAGTTGACTCTTTAACAAGTGACCCACAGGAGATTGGGTTGAAGTGCTGGGAATCCCTCGTGGATGCAAACGGGCAGACGCCGCATGCCTATGCCATGATGAGGAGTAATGACTCTTATAATATGCTGGTAGCCCGTAAACTTGCTGATAGACAAAGGGGTGAAATTTCGGTAACAATTGAGAATGAGATAGAGCAACAGTCACTGAGAGTGGAGCTTAAGCAAAAGCAAAGTAACTTAGTCAAACGAGGTCAGAGTTCTTGTGCCAAGTGTGCGAATGCAGGAATTTGCTACAACAGAAGAGTTCCAGGCTCACATGGTTTGCTTCACCGCCCCTTTATTTATTCGATGCTAGCTGTTGCAGCTGTTTGCGTATGTGTTTGCGTGTTCTTCCGTGGACGCCCTTTTGTAGGCTCAGTTGCCCCCTTCAGTTGGGAAAATCTGAATTTTGGCACAATATGA 3084 0.4776 MEKVAPPPILMHRKRDLSYGVVPAGPSETWRWDWDSVRFAGKPPPPSQNDDVVFEEASVAVPPLQLNLGGGGGRLNNSNSGNSNKRVRSGSPGSGTGTASYPMCQVDNCREDLSKAKDYHRRHKVCEAHSKASKAPLANQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQPEDVTSATPAPAGAAAANLEIFNLLTAIAGASQGKFEEKRSQVPDREQLVQILNRIPLPADLATKLLDAGSGNVNGKKDHVQLQTPSCYQRHDQLNHTPAAPSTMDLLGVLSTTLSGGSAPVASASPSQNRSCSSDDGSDKSRNSAADQMRQQQQFFSVGGERSSSSSQSPVEDSDCQEDVRVNLPLQLFSSSPEDDSLPKLASSRKYFSSDSSNPAEDRSPSSSPPVVEMQFDLQGGARGLKPESISSGRGVHANKEASQSHSCNISLDLFKGSNNRIQQPSSLQSVPFQAGYTSSGSDHSPPSLNSDSQDRTGRIMFKLFDKHPSHFPGTLRAQIYNWLSNRPSDMESYIRPGCVVLSIYASMSSADWEKLEENFLQHVHSLIQNSDSNIWRNGRFLVHSGSQLVSHKDGKIRICKPWRTWKSPELISVSPLAIVSGQETSISLKGRNLSTPGTKIHCTGTGSYTSVEVIGSTYSGVIYDKIKLSGFKVQDVSPGVLGRCFIEVENGFKGNSFPVIIADETICKELIPLESEFDEVEKICDAISEEHEHHFGRPRSREEALHFLNELGWLFQRERFSYVHEVPYYSLDRFKFVLTFAVERNCCMLVKTLLDVMVDKHLRGEWLSTGLVEMLNAIQLLNRAVKRKYIGMIDLLIHYSIPCQNGTSRKYAFPPNLEGPGGITPLHLAACTSSSESVVDSLTSDPQEIGLKCWESLVDANGQTPHAYAMMRSNDSYNMLVARKLADRQRGEISVTIENEIEQQSLRVELKQKQSNLVKRGQSSCAKCANAGICYNRRVPGSHGLLHRPFIYSMLAVAAVCVCVCVFFRGRPFVGSVAPFSWENLNFGTI 1027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g0985 1027 Gene3D - 95 165 IPR036893 GO:0003677|GO:0005634
Aed11g0985 1027 ProSiteProfiles Zinc finger SBP-type profile. 101 178 IPR004333 GO:0003677
Aed11g0985 1027 MobiDBLite consensus disorder prediction 295 440 - -
Aed11g0985 1027 MobiDBLite consensus disorder prediction 165 189 - -
Aed11g0985 1027 Pfam SBP domain 104 177 IPR004333 GO:0003677
Aed11g0985 1027 MobiDBLite consensus disorder prediction 295 314 - -
Aed11g0985 1027 MobiDBLite consensus disorder prediction 65 102 - -
Aed11g0985 1027 MobiDBLite consensus disorder prediction 364 409 - -
Aed11g0985 1027 MobiDBLite consensus disorder prediction 71 102 - -
Aed11g0985 1027 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 31 1027 IPR044817 GO:0003677
Aed11g0985 1027 Gene3D - 769 959 IPR036770 -
Aed11g0985 1027 MobiDBLite consensus disorder prediction 459 489 - -
Aed11g0985 1027 MobiDBLite consensus disorder prediction 324 353 - -
Aed11g0985 1027 SUPERFAMILY SBT domain 102 182 IPR036893 GO:0003677|GO:0005634
Aed11g0985 1027 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 14 31 1027 - -
Aed11g0985 1027 SUPERFAMILY Ankyrin repeat 774 917 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g0985 Aed-Chr11 15719501 15726005 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g0985 8 1027 SBP-box Gene Family AT1G20980 52.268 0.0 934
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Aed11g0985 SBP 1.5e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g0985 - - gmx:100819004 1758.04