Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g0948 ATGCCTCGCCCTTGTTTCCACAAGCTTGTTCTCCCCACCACTCTCCAATCCAGACAACTGAGGATTCCGGATAATTTTCTGAGGAAATATGGGAACCAGCTTTCTACTATTGCCACCTTCACTGTTCCTGACGGTAGTGTTTGGCGAATAGGATTGAAGAAAGCAGACAACAGAATTTGGTTTGTTGATGGTTGGCAAGATTTTGTTCAACGCTACTCCATTGGCTGTGGATACTTTTTGGTGTTCATGTATGAAGGGAATTCATCCTTCATTGTTCATATTTTTAATTTGAGTACCTCTGAGGTAAACTATCAATCGGCCATGAGAAACCATAACGAAGGCCCATGCTTTGGCAATTATCATCATATTTTCGATGAAATGGAAGATGTAGACTCCCTTGATTTGTTGGAATTGTCGCCTCAGTACCTTACTTCCGGTGCATTGCAAAACAAGGGTTTTGCTGGATCTGTCGATCAACTGACACCTGGGAAGAGTCACACTCCAAGTTTGCAGAATTTGTTCAACGGTGGATCAAAACTCAATCGTGTAAACTGGGGTGATGGTGGGAGTGCTTTGTCTTCGAAGGGTGCCATTTCACAAGGCAATCAGTCAACCAGAGACATAGGTGTTCAGTTTAATGCTGTTGAGTTTAAAAGGTCCACCGAAGAATTGAAATTGCGTTATTCAAATAATGATGAAGCAATTAGTAAAACTGCAAAAAAGAAGCGGAAATCAGAGCCCAATGGCGAAGAACCCTCTGGTGAAAATGAAGAGGAGGCAGAAATGCGCTATAGGTTTTACGAAAGTGCATCTGCGAGGAAAAGAACCGTGACAGCAGAAGAAAGAGAAAGGGCAATCAATGCATCAAAAGCATTTGAACCGACTAATCCTTTCTGCCGAGTCGTCCTGCGACCCTCCTATTTGTATAGGGGATGCATAATGTATCTGCCTTCCTGCTTTGCAGAGAAGAATCTGAATGGGGTTTCGGGATTCATCAAACTTCAGTTGTCGAACGGTAGACAGTGGTCTGTCCGCTGCCTCTATAGGGGAGGTCGAGCCAAGTTAAGCCAAGGATGGTTTGAATTCACAGTGGAGAACAATTTGGGAGAAGGTGATGTTTGTGTGTTTGAGCTCCTTAGAATGAAGGAAGTTGTGCTGCAAGTTACGGTGTTTCGCGTAACCGAGGATGCAGGGTTGTTGAACCACCACCCTCCTATGCTGCAGCAGCAGCATAGCCCGAACATGAGCCACACTAAACTCTTGAACCCTCACTTGCAGCATCGCATCAGTACAACCAAATTGGTTAGAAATTAG 1314 0.4429 MPRPCFHKLVLPTTLQSRQLRIPDNFLRKYGNQLSTIATFTVPDGSVWRIGLKKADNRIWFVDGWQDFVQRYSIGCGYFLVFMYEGNSSFIVHIFNLSTSEVNYQSAMRNHNEGPCFGNYHHIFDEMEDVDSLDLLELSPQYLTSGALQNKGFAGSVDQLTPGKSHTPSLQNLFNGGSKLNRVNWGDGGSALSSKGAISQGNQSTRDIGVQFNAVEFKRSTEELKLRYSNNDEAISKTAKKKRKSEPNGEEPSGENEEEAEMRYRFYESASARKRTVTAEERERAINASKAFEPTNPFCRVVLRPSYLYRGCIMYLPSCFAEKNLNGVSGFIKLQLSNGRQWSVRCLYRGGRAKLSQGWFEFTVENNLGEGDVCVFELLRMKEVVLQVTVFRVTEDAGLLNHHPPMLQQQHSPNMSHTKLLNPHLQHRISTTKLVRN 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g0948 437 Pfam B3 DNA binding domain 302 392 IPR003340 GO:0003677
Aed11g0948 437 Pfam B3 DNA binding domain 8 96 IPR003340 GO:0003677
Aed11g0948 437 MobiDBLite consensus disorder prediction 236 261 - -
Aed11g0948 437 PANTHER B3 DOMAIN-CONTAINING 1 427 - -
Aed11g0948 437 SMART B3_2 299 394 IPR003340 GO:0003677
Aed11g0948 437 SMART B3_2 6 98 IPR003340 GO:0003677
Aed11g0948 437 CDD B3_DNA 297 392 IPR003340 GO:0003677
Aed11g0948 437 MobiDBLite consensus disorder prediction 236 251 - -
Aed11g0948 437 Gene3D - 1 99 IPR015300 -
Aed11g0948 437 PANTHER B3 DOMAIN TRANSCRIPTION FACTOR VRN1-LIKE PROTEIN 1 427 - -
Aed11g0948 437 ProSiteProfiles B3 DNA-binding domain profile. 5 98 IPR003340 GO:0003677
Aed11g0948 437 ProSiteProfiles B3 DNA-binding domain profile. 299 394 IPR003340 GO:0003677
Aed11g0948 437 Gene3D - 276 396 IPR015300 -
Aed11g0948 437 CDD B3_DNA 4 96 IPR003340 GO:0003677
Aed11g0948 437 SUPERFAMILY DNA-binding pseudobarrel domain 3 97 IPR015300 -
Aed11g0948 437 SUPERFAMILY DNA-binding pseudobarrel domain 292 393 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g0948 Aed-Chr11 15194942 15200821 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g0948 1 398 B3 DNA Binding Superfamily AT3G18990 49.144 3.68e-127 371
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Aed11g0948 B3 3.1e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g0948 - - gmx:100806715 793.497