Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g0945 ATGGAGATTTCATCACCAATCAACTCAAATAACAGAGGCCCAAGTCCAGTTCCCAATTTAGTTGTGCAAGATAAAAACAAGATGCCATTTACAAATATGACAAAAATCATGACTTGGATTCTTCTAGATAATGCAAAAGTTTCATACGATGCCTTGGAGATAATTCAACAAAGTGCTACAAAGTATATAAACTTTGTAACTAGGAAAGCCAAGGAGCGATGCAAAAGTGAGTATAGAAAGATTATGAATGTAGAGGACCTATTATGGGCCATTGAGAAACTAGGCTTTGATGACTATAATGATCCTCTCGCTACTTTTATCCAACGTTATCGTAACATTCATGGAGGAAATCTCTCCAATAGCCATGGGGAGCCCATTCCTCACACTAGAAACAATAGGCCTAGTTTTCATGAGGAGGAGCTCACTCCTCGTCTTAAACATAATGAGTCTAGTTTTCATGGGGAGCTCATTCCTTATACTGAACCCAATGGATATAGTTTTCATGGAGAACTCATTCCTCACTCTTTAATACCACCACCAGTTCATTCCTCTAAGCCATACTTTCCCATCAACCCAATCACAAATTTTGAAAAGGTTGACCTAGATGACTTCATCAATGAGTTCTACCAAGATGGATATGGTGTTGATTGGTCAAATGATGCTTTCAACAACTTTGATTTTTTCACTCTCAACAAACATGATCAACCATGA 711 0.3783 MEISSPINSNNRGPSPVPNLVVQDKNKMPFTNMTKIMTWILLDNAKVSYDALEIIQQSATKYINFVTRKAKERCKSEYRKIMNVEDLLWAIEKLGFDDYNDPLATFIQRYRNIHGGNLSNSHGEPIPHTRNNRPSFHEEELTPRLKHNESSFHGELIPYTEPNGYSFHGELIPHSLIPPPVHSSKPYFPINPITNFEKVDLDDFINEFYQDGYGVDWSNDAFNNFDFFTLNKHDQP 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g0945 236 MobiDBLite consensus disorder prediction 1 20 - -
Aed11g0945 236 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 23 123 - -
Aed11g0945 236 PRINTS CCAAT-binding transcription factor subunit A signature 93 111 - -
Aed11g0945 236 PRINTS CCAAT-binding transcription factor subunit A signature 74 92 - -
Aed11g0945 236 PRINTS CCAAT-binding transcription factor subunit A signature 55 73 - -
Aed11g0945 236 SUPERFAMILY Histone-fold 27 144 IPR009072 GO:0046982
Aed11g0945 236 MobiDBLite consensus disorder prediction 1 17 - -
Aed11g0945 236 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 27 91 IPR003958 -
Aed11g0945 236 Gene3D Histone, subunit A 21 150 IPR009072 GO:0046982
Aed11g0945 236 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 23 123 IPR027113 GO:0001228|GO:0006355|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g0945 Aed-Chr11 15143303 15144013 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g0945 18 180 CCAAT-HAP3 Transcription Factor Family AT1G21970 39.024 3.83e-29 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Aed11g0945 CBFD_NFYB_HMF 6.5e-14 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g0945 K08065 - pda:103724115 110.923