Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g0821 ATGAAAAGTAGCATAACCACTAATGTCAAAAGAAGCCCCAATAAAGCAAGCTTTGTCAAGCACGAATTTGATGAAGATGAGGAAAAAGGCATTTTTAACACTGAATGCTCAAAAAGGGAAGAGTTAACTTCTACCACTTTAAACAAAGCCTCAACATTCAGGCTTGTCATGAAGCAATCTTTTATTAATGGAGATTATGTGGAAATACCGCAGCATTTTGCAGAAAAATATTTAAAGAAAACGCGTGTAGTTGTCATCCTTGAAGTATTGGATGGAAGAACTTGGCCTGTTATTTATTCTTCTCCTAGAATTATCGCGGGATGGCAGAAATTTGCATCAGAAAACAATTTGAATGTGGGGGATGTTTGTGTTTTTGAACCAATCACGAAGATCCATCAAGGCATTGCTTTCAAGGTTTCAATCTTTCAAGGTACAGAGGAACCAAGTTGCCCCATTTCACAAGTGCATCATCCTTTAACCAACTTGACAGGTGGAAGTTCAAGTCAAAGATCTTCAATTGTGAAAAGCCGCTTCAAGTCGAAGATCTTAACAATCAGAGCATTTAAAAGAGCAAGCAAATTCAGATCAGAAAATCCCTCTTTCTTGGTCACTTTAAGTACAAAAAGCAAGACAAATATAACCAGACACGCGCATGTGCCGAAGGACTTTGTAAGAAAGCATTTTGTAAATATGAACCAGAAGGTGTTGATGATACACTTTAGAAAGAAATTGTGGCCTGTAAAGTTTTCACTTTATGAATGTTCAAATAGTTTAGGCAAGCTCTCTACCGGCTGGGCCTCGTTTGTAAGAGAAAATGAACTGCAACGCGGAGATGTTTGTGTCTTCGAGCTCGTCAACAAAGAAGATGTAACACTCGATGCTCATGTTTTCAGAGGAGAACAAGTAATGTAA 912 0.3805 MKSSITTNVKRSPNKASFVKHEFDEDEEKGIFNTECSKREELTSTTLNKASTFRLVMKQSFINGDYVEIPQHFAEKYLKKTRVVVILEVLDGRTWPVIYSSPRIIAGWQKFASENNLNVGDVCVFEPITKIHQGIAFKVSIFQGTEEPSCPISQVHHPLTNLTGGSSSQRSSIVKSRFKSKILTIRAFKRASKFRSENPSFLVTLSTKSKTNITRHAHVPKDFVRKHFVNMNQKVLMIHFRKKLWPVKFSLYECSNSLGKLSTGWASFVRENELQRGDVCVFELVNKEDVTLDAHVFRGEQVM 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g0821 303 CDD B3_DNA 53 142 IPR003340 GO:0003677
Aed11g0821 303 SMART B3_2 201 300 IPR003340 GO:0003677
Aed11g0821 303 SMART B3_2 53 145 IPR003340 GO:0003677
Aed11g0821 303 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 176 298 - -
Aed11g0821 303 SUPERFAMILY DNA-binding pseudobarrel domain 51 143 IPR015300 -
Aed11g0821 303 Pfam B3 DNA binding domain 207 299 IPR003340 GO:0003677
Aed11g0821 303 Pfam B3 DNA binding domain 56 130 IPR003340 GO:0003677
Aed11g0821 303 ProSiteProfiles B3 DNA-binding domain profile. 52 145 IPR003340 GO:0003677
Aed11g0821 303 SUPERFAMILY DNA-binding pseudobarrel domain 195 298 IPR015300 -
Aed11g0821 303 CDD B3_DNA 199 298 IPR003340 GO:0003677
Aed11g0821 303 PANTHER B3 DOMAIN-CONTAINING 176 298 - -
Aed11g0821 303 PANTHER B3 DOMAIN-CONTAINING 28 143 - -
Aed11g0821 303 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 28 143 - -
Aed11g0821 303 Gene3D - 32 146 IPR015300 -
Aed11g0821 303 Gene3D - 184 301 IPR015300 -
Aed11g0821 303 ProSiteProfiles B3 DNA-binding domain profile. 202 300 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g0821 Aed-Chr11 12827997 12830134 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g0821 71 287 REM Transcription Factor Family AT4G31690 27.149 2.03e-12 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Aed11g0821 B3 6.4e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g0821 - - ccaj:109791753 320.472