Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g0819 ATGAAAAGTGGCATGACTGGAAGTACTATATCTCAAAAGGAAAAAATTTTCATACAAAAATTAGATGGTATGACCTTGCTTTCAAAGTTTCCATCTTTCAAGGTGCAGGGGAACCAAGTTGCCCCATTTCACAAGCATATGCCAATAGACTTTGTCAGAAAGTATCTTGCAAATATGAACCATAATGAGATGATGATTAAGTTTAGAAAGAAATTGTGGTCTATAAGAATTTTACTGAATGAATCATATGCTTCAAGCAAGCTATCTACTGGTTGGGTCTCATTTGAAAGGGAAAATAAATTGCAATCGGGAGATGCTTGTATCTTTGAACTCATCAAGAAAGAAAATGCAACACTTGATGGTTGGCTACAAGGCGGTCTAAGACAAATTGGGTTTGTTGGGTTATTGTCATGGGAGGAGGTGGAGATTGGTCTCCCTGAGGTGAATGTGGTGGAGACAAGGAAGGAGAAGCATTTGCTTTCCTCTTTCTAA 492 0.3801 MKSGMTGSTISQKEKIFIQKLDGMTLLSKFPSFKVQGNQVAPFHKHMPIDFVRKYLANMNHNEMMIKFRKKLWSIRILLNESYASSKLSTGWVSFERENKLQSGDACIFELIKKENATLDGWLQGGLRQIGFVGLLSWEEVEIGLPEVNVVETRKEKHLLSSF 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g0819 163 ProSiteProfiles B3 DNA-binding domain profile. 30 127 IPR003340 GO:0003677
Aed11g0819 163 PANTHER B3 DOMAIN-CONTAINING 43 116 - -
Aed11g0819 163 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-LIKE 43 116 - -
Aed11g0819 163 CDD B3_DNA 47 115 IPR003340 GO:0003677
Aed11g0819 163 Gene3D - 9 120 IPR015300 -
Aed11g0819 163 Pfam B3 DNA binding domain 46 118 IPR003340 GO:0003677
Aed11g0819 163 SUPERFAMILY DNA-binding pseudobarrel domain 40 115 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g0819 Aed-Chr11 12795340 12804063 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g0819 46 119 B3 DNA Binding Superfamily AT3G18990 33.784 3.57e-08 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Aed11g0819 B3 1.5e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g0819 - - ccaj:109791753 92.4337