Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g0818 TTTTCCACATACTATTCTCTAGATCATGGCCACTTGCTGTTGTTTCAATACAATGGAACTTCTCATTTTGATGTGCACATATTCGACAAAAGTGCGGTTGAAATAGACTATCCTTCCACCAATTCTACTCATAATGATGATGATGATGATGATTCCTTTGAAGTTTCGGATGAGGAATTTCATTGCCAAAAGACTAGACAGAAATCCACAGTAGTGTCATCACCTCAACCTTCTAAGAAAGTGAACTTGCATCATCAGAGTGTCCAAAAGACAAAATTTGTGAAGCAAGAAGTAGATGGTATGTTCAATTTTTCAGAAGATGAAGGCATTTTGAACAGTACTGAATGCCCAAAAGTGGAGGACTTAACTTCTCCCTCTTTCAGGCTTGTCATGAAGCTATCCTTTATCAGTAGAGATTACTTGGAAATACCACCAGAATTTGTAGAACAGTATTTGAAGAGAACACAAGCAGTTGTGCTCCTTGAGGGGTTGGATGGGAGAAGTTGGCCTGCTTTTTGTTCTGCTCCTAGAATTACTGAAGGATGGAACAAATTTGCATCAGGAAACAATTTGAATGTCGAGGATGTTTGTGTTTTTGAGCTGATCCATAAGATGCAGTGCTTTGCTTTCAAAGTTTCCATCTTTCAAGTTGCAGAAGAACCAAGTTGGCCCATTTCAAAAGGTAATCTATTATTCAATTTTATCTACGCAATGAGGATTTAA 723 0.379 FSTYYSLDHGHLLLFQYNGTSHFDVHIFDKSAVEIDYPSTNSTHNDDDDDDSFEVSDEEFHCQKTRQKSTVVSSPQPSKKVNLHHQSVQKTKFVKQEVDGMFNFSEDEGILNSTECPKVEDLTSPSFRLVMKLSFISRDYLEIPPEFVEQYLKRTQAVVLLEGLDGRSWPAFCSAPRITEGWNKFASGNNLNVEDVCVFELIHKMQCFAFKVSIFQVAEEPSWPISKGNLLFNFIYAMRI 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g0818 240 PANTHER B3 DOMAIN-CONTAINING 1 216 - -
Aed11g0818 240 SUPERFAMILY DNA-binding pseudobarrel domain 123 216 IPR015300 -
Aed11g0818 240 CDD B3_DNA 125 215 IPR003340 GO:0003677
Aed11g0818 240 Gene3D - 112 220 IPR015300 -
Aed11g0818 240 ProSiteProfiles B3 DNA-binding domain profile. 126 218 IPR003340 GO:0003677
Aed11g0818 240 SMART B3_2 127 218 IPR003340 GO:0003677
Aed11g0818 240 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 1 216 - -
Aed11g0818 240 Pfam B3 DNA binding domain 130 216 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g0818 Aed-Chr11 12706621 12707532 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g0818 1 217 B3 DNA Binding Superfamily AT3G18990 26.471 6.95e-17 77.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Aed11g0818 B3 7.3e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g0818 - - gmx:100815331 259.61