Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g0790 ATGATGTTCCCTTTGGTTGTGTTGTTTTTTCTTGCGTGCAATTTCCATATTGCACCTTTTGTGAGTTCTCTGACAGATGAAGGCTCTGTGCTCTTGACACTGAAGAAGTCCATCATCACAGACCCAGAAGGGTCCATGAGTAACTGGAACTCTTCTGATGACACCCCATGTTCGTGGAATGGGATCACATGCAAGGACCAAAGTGTTATCTCCATTAGTATCCCAAAGAGGAAGCTTCATGGTGTTCTTCCCTCTGAGATAGGTTCACTTTCCCACCTCCGCCATCTAAATTTGAGGAACAATAATCTCTTTGGGGAGATTCCTCTTGCGCTCTTTGAGGCTCAAGGACTGCAAAGTTTGGTGCTTTCTGGAAATTCCTTATCTGGGTCTGTTCCAAATGAGATTGGGAAGCTAAGGTACCTTCAAGCTCTTGATTTGTCTCAGAATTTCTTCAATGAGTCTTTACCAGCAGCAATAGTCCAATGCAAGAGGCTCAGAACTTTGGTTCTTAGTCATAACAAAGTTATCCCAAAGAGGAAGCTTCATGGTGTTCTTCCCTCTGAGATAGGTTCACTTTCCCACCTCCGCCATCTAAATTTGAGGAACAATAATCTCTTTGGGGAGATTCCTCTTGCGCTCTTTGAGGCTCAAGGACTGCAAAGTTTGGTGCTTTCTGGAAATTCCTTATCTGGGTCTGTTCCAAATGAGATTGGGAAGCTAAGGTACCTTCAAGCTCTTGATTTGTCTCAGAATTTCTTCAATGAGTCTTTACCAGCAGCAATAGTCCAATGCAAGAGGCTCAGAACTTTGGTTCTTAGTCATAACAATTTCACAGGTTCTCTGCCAAATGGTTTTGGTGGTGGGTTGTCTTTTCTTGAAAAGCTTGACCTTTCTTTCAATGAATTCAATGGTTCAATTCCTAGTGACTTGGGAAAGCTTTCAAGCCTTCAAGGCACTGTTGATTTGTCTCATAATCATTTCAGTGGTTCAATCCCATCCAGTCTTGGTGATTTGCCTGAGAAGGTTTACATTGATCTCACTTACAACAATTTAAGTGGTCCAATACCAAAAACTGGTGCTTTGATGAATAGAGGGCCAACTGCTTTTATTGGCAATTATGGTCTTTGTGGGGCCCCTTTGAAGAATCTGTGTGCCCCAGATACTCATGGTGCCACTTCACCTTCCTCTTTTCCATTTTTACCTGATAATTTCCCACCTCAGGATAGTGGTGATGGTTTTGTGAAAAGGGGGAAAAGTAAAAGGCTAAGTGAGGGTGCTGTGGTTGCTATTGTTGTTGGTGATATAGTTGGAATTTGCCTTTTGGGTTTGTTGTTCTCCTACTTTTACTCAAGGGTTTGGGGTTTTACTCATGATCAAGATGAAAAGGGTTTTGACAAGGGAGTGAGATTGAGGAAGGAATGCTTATGCTTCTTCAGGAAGGAGGACTCCGAGACCCTATCAGATCATGTTGAGCAATATGATCTTGTCCCATTGGATGCTCAAGTGACCTTTGATTTGGATGAGCTTCTTAAGGCTTCAGCTTTTGTTTTGGGAAAAAGTGGAATAGGGATTGTCTACAAAGTTGTGCTTGATGAAGGGATCAACTTGGCTGTGAGAAGATTAGGGGAGGGAGGTTCTCAAAGGTTTAAAGAGTTCCAAACAGAAGTTGAAGCAATAGGAAAGTTAAGGCATCCAAATCTAGTTACTCTCAGAGCCTATTATTGGTCTGTTGATGAGAAGCTTCTCATCTATGATTTTGTTCCCAATGGAAGCCTTGCTACAGCAATTCATGGTAAGTTTCATCAAATGCAATTCTATATTTATTCTAATCGCAATTTATGA 1842 0.4175 MMFPLVVLFFLACNFHIAPFVSSLTDEGSVLLTLKKSIITDPEGSMSNWNSSDDTPCSWNGITCKDQSVISISIPKRKLHGVLPSEIGSLSHLRHLNLRNNNLFGEIPLALFEAQGLQSLVLSGNSLSGSVPNEIGKLRYLQALDLSQNFFNESLPAAIVQCKRLRTLVLSHNKVIPKRKLHGVLPSEIGSLSHLRHLNLRNNNLFGEIPLALFEAQGLQSLVLSGNSLSGSVPNEIGKLRYLQALDLSQNFFNESLPAAIVQCKRLRTLVLSHNNFTGSLPNGFGGGLSFLEKLDLSFNEFNGSIPSDLGKLSSLQGTVDLSHNHFSGSIPSSLGDLPEKVYIDLTYNNLSGPIPKTGALMNRGPTAFIGNYGLCGAPLKNLCAPDTHGATSPSSFPFLPDNFPPQDSGDGFVKRGKSKRLSEGAVVAIVVGDIVGICLLGLLFSYFYSRVWGFTHDQDEKGFDKGVRLRKECLCFFRKEDSETLSDHVEQYDLVPLDAQVTFDLDELLKASAFVLGKSGIGIVYKVVLDEGINLAVRRLGEGGSQRFKEFQTEVEAIGKLRHPNLVTLRAYYWSVDEKLLIYDFVPNGSLATAIHGKFHQMQFYIYSNRNL 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g0790 613 SUPERFAMILY L domain-like 34 380 - -
Aed11g0790 613 Pfam Protein tyrosine and serine/threonine kinase 517 599 IPR001245 GO:0004672|GO:0006468
Aed11g0790 613 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 6 175 - -
Aed11g0790 613 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 176 605 - -
Aed11g0790 613 Gene3D Ribonuclease Inhibitor 179 384 IPR032675 -
Aed11g0790 613 ProSiteProfiles Protein kinase domain profile. 511 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed11g0790 613 Pfam Leucine rich repeat 193 251 IPR001611 GO:0005515
Aed11g0790 613 Pfam Leucine rich repeat 116 174 IPR001611 GO:0005515
Aed11g0790 613 Gene3D Phosphorylase Kinase; domain 1 480 586 - -
Aed11g0790 613 Pfam Leucine Rich Repeat 92 110 IPR001611 GO:0005515
Aed11g0790 613 Pfam Leucine Rich Repeat 266 286 IPR001611 GO:0005515
Aed11g0790 613 Pfam Leucine rich repeat N-terminal domain 26 64 IPR013210 -
Aed11g0790 613 PANTHER RECEPTOR PROTEIN KINASE-LIKE PROTEIN ZAR1 6 175 - -
Aed11g0790 613 PANTHER RECEPTOR PROTEIN KINASE-LIKE PROTEIN ZAR1 176 605 - -
Aed11g0790 613 SUPERFAMILY Protein kinase-like (PK-like) 516 600 IPR011009 -
Aed11g0790 613 SMART LRR_typ_2 289 313 IPR003591 -
Aed11g0790 613 SMART LRR_typ_2 240 264 IPR003591 -
Aed11g0790 613 SMART LRR_typ_2 90 114 IPR003591 -
Aed11g0790 613 SMART LRR_typ_2 138 162 IPR003591 -
Aed11g0790 613 SMART LRR_typ_2 192 216 IPR003591 -
Aed11g0790 613 SMART LRR_typ_2 265 287 IPR003591 -
Aed11g0790 613 Gene3D Ribonuclease Inhibitor 23 178 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g0790 Aed-Chr11 11719935 11721790 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g0790 160 603 Receptor kinase-like Gene Family AT2G01210 65.471 0.0 572
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Aed11g0790 PK_Tyr_Ser-Thr 1.6e-05 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g0790 - - gmx:100810225 751.125