Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g0786 ATGGCAAAACCTATATCTAAAACAGGTTCGCGTAAAAATGTACGTATTGGTTCGCGTAAGCATACTCGTAAAATACCAAAGGGAGTTATTCATGTTCAAGCTAGTTTCAACAATACTATTGTGACTGTTACAGATGTACGAGGTCGGGTGATTTCTTGGTCCTCCGCCGGGACTTGTGGATTCAAGGGTACACGAAGGGGGACACCTTTTGCCGCTCAAACTGCAGCAGGAAATGCTATTCGAACAGTATCGGATCAAGGCATGCAACGAGCAGAAGTCATGATAAAAGGTCCTGGTCTCGGAAGAGATGCGGCATTAAGAGCTATTCGTAGAAGTGGTATACTATTAAATTTTATACGAGATGTAACTCCTATGCCACATAATGGATGTAGGTCTCCTAAAAAAAAGACGTGTGTAAAACTAAAAAGAAACATTGAAAAGATTTCAAGAGAAATAAACAAGTCAAGGCTTTGA 474 0.4051 MAKPISKTGSRKNVRIGSRKHTRKIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRTVSDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFIRDVTPMPHNGCRSPKKKTCVKLKRNIEKISREINKSRL 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g0786 157 ProSitePatterns Ribosomal protein S11 signature. 106 128 IPR018102 -
Aed11g0786 157 Coils Coil 138 157 - -
Aed11g0786 157 Pfam Ribosomal protein S11 28 136 IPR001971 GO:0003735|GO:0005840|GO:0006412
Aed11g0786 157 SUPERFAMILY Translational machinery components 23 136 - -
Aed11g0786 157 Gene3D Ribosomal protein S11 8 138 IPR036967 GO:0003735|GO:0005840|GO:0006412
Aed11g0786 157 PANTHER 40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11 1 136 IPR001971 GO:0003735|GO:0005840|GO:0006412
Aed11g0786 157 MobiDBLite consensus disorder prediction 1 22 - -
Aed11g0786 157 TIGRFAM uS11_bact: ribosomal protein uS11 19 135 IPR019981 GO:0003735|GO:0005840|GO:0006412
Aed11g0786 157 Hamap 30S ribosomal protein S11 [rpsK]. 3 138 IPR001971 GO:0003735|GO:0005840|GO:0006412
Aed11g0786 157 PANTHER 30S RIBOSOMAL PROTEIN S11, CHLOROPLASTIC 1 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g0786 Aed-Chr11 11690970 11691443 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g0786 1 128 Cytoplasmic Ribosomal Protein Gene Family AT3G52580 34.307 8.24e-15 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g0786 K02948 - gmx:3989330 270.396