LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed11g0762	ATGAGTAACAATGACCAAGCTTCTGGTGCTAGTGGCTACATTAGGGCTTTAATTTGCAACGCTGCTTCTGGTGCCGCTGCTGGGGCAATAGCGGCTACATTTGTGTGCCCATTGGATGTGATCAAGACTAGACTACAAGTTCATGGCCTTCCTCATGGGCAGAAAGGTAGTGTCATCGTCACAAGCTTGCAAAATATATTAAGGAATGAAGGCTTCAGGGGAATGTACCGTGGCCTTTCACCAACAATACTTGCATTACTTCCAAACTGGGCAGTTTACTTCACAAGTTATGAGCAACTAAAGGGCATACTTCGTTCACACGAAGATGGTTGCGACGAACTCACAATTACTGGAAATATTATAGCTGCTGCTGGTGCTGGTGCAGCAACAGCAATTTCTACAAATCCATTGTGGGTTGTTAAAACAAGACTTCAAACACAAGGAATGAGGCCTGGTGTTATTCCTTACAAGAGCGTTCTTTCTGCTTTGACAAGGATTACACATGAGGAAGGCATACGCGGCCTATATAGTGGCATTGTGCCATCATTGGCTGGCGTAAGTCATGTTGCAATTCAATTTCCAGCATATGAAAAGATCAAGTCATACATAGCAGAAAAAGATAACACAACTGTTGATAAGCTAAGTCCTGGTGGTGTTGCCATTGCATCGTCAATTGCAAAAGTATTTGCCTCTCTAATGACCTATCCGCATGAGGTAATACGATCCCGGCTGCAAGAGCAAGGCCAGGCCAAACATATTGGGGTCCAATATGCAGGGGTTATTGACTGTACTAAGAAGGTTTTTCAGAAGGAAGGCATTCCAGGCTTTTATCGTGGTTGCGCGACCAATCTATTAAGAACAACTCCATCTGCAGTTATTACATTCACTAGTTATGAGATGATACACAGATTTTTGGAGCGACCAGTTGACAAAGGGTGTCCACATGGCCGTTCTAAAGCAAATGAACGTGACAAGCCACGGTCAAAAGCCAGTGGCGCTGATAGGGGGCAACCACCGTCTCAGTCTAACAAGAAAGCTTCATCAATCCCTCATGGAAACAAAGAGCAGCTAACAAGACAATGA	1083	0.4432	MSNNDQASGASGYIRALICNAASGAAAGAIAATFVCPLDVIKTRLQVHGLPHGQKGSVIVTSLQNILRNEGFRGMYRGLSPTILALLPNWAVYFTSYEQLKGILRSHEDGCDELTITGNIIAAAGAGAATAISTNPLWVVKTRLQTQGMRPGVIPYKSVLSALTRITHEEGIRGLYSGIVPSLAGVSHVAIQFPAYEKIKSYIAEKDNTTVDKLSPGGVAIASSIAKVFASLMTYPHEVIRSRLQEQGQAKHIGVQYAGVIDCTKKVFQKEGIPGFYRGCATNLLRTTPSAVITFTSYEMIHRFLERPVDKGCPHGRSKANERDKPRSKASGADRGQPPSQSNKKASSIPHGNKEQLTRQ	360

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed11g0762	360	Pfam	Mitochondrial carrier protein	20	106	IPR018108	-
	Aed11g0762	360	Pfam	Mitochondrial carrier protein	114	205	IPR018108	-
	Aed11g0762	360	Pfam	Mitochondrial carrier protein	215	306	IPR018108	-
	Aed11g0762	360	PRINTS	Mitochondrial carrier protein signature	129	147	IPR002067	GO:0055085
	Aed11g0762	360	PRINTS	Mitochondrial carrier protein signature	20	33	IPR002067	GO:0055085
	Aed11g0762	360	PRINTS	Mitochondrial carrier protein signature	33	47	IPR002067	GO:0055085
	Aed11g0762	360	PRINTS	Mitochondrial carrier protein signature	78	98	IPR002067	GO:0055085
	Aed11g0762	360	PRINTS	Mitochondrial carrier protein signature	223	245	IPR002067	GO:0055085
	Aed11g0762	360	ProSiteProfiles	Solute carrier (Solcar) repeat profile.	214	304	IPR018108	-
	Aed11g0762	360	Gene3D	Mitochondrial carrier domain	2	107	IPR023395	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed11g0762	Aed-Chr11	11056738	11065273	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed11g0762	33	351	Chloroplast and Mitochondria Gene Families	AT1G25380	66.159	7.42e-148	420

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed11g0762	K15115		-	gmx:100816376	605.905

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