Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g0647 ATGGATGCAATCAGTTGCATGGATGAGAGCACCACCACTGACTCACTCTCCATGAGTCTTTCTCCGACGTCGTCGATGTCGGAGAAAACGAGGCCTTCTTCAACGATCTTGTCGTCGGAAAAGGCTTCTATGTCCCCGCCGCCGCCATCGAACACGCTGTGCCGCGTGGGGAGTGGCGCGAGCGCGGTGGTGGATCTCGATGGCGGAGGTGGGAGCGGCGAGGTGGAGTCGCGGAAGCTCCCCTCGTCGAAGTACAAGGGCGTGGTGCCGCAGCCCAACGGCCGGTGGGGCGCACAGATTTACGAGAAGCACCAGCGCGTGTGGCTGGGGACGTTCAACGAGGAGGACGAGGCGGCGCGTGCTTACGACATCGCCGCGCAGCGATTCCGCGGCAAGGACGCCGTCACGAATTTCAAACCACTAGCCGGCGACGTAGGCGTCGACGACGATGGAGAATCGGAGTTTCTCAACTCGCATTCCAAGCCCGAGATCGTCGACATGCTGCGCAAGCACACGTACAATGACGAGCTGGAGCAGAGCAAGCGTAGCCGCGGCGTATTTGAACGGCGGCGCGGCGGAGCCGCCGGCGCCGGCCCCGGAGTTCCCATCTCCGGCGCGTGCGGCATGAAGGCGCGTGAGAATCTATTCGAGAAGGCCGTTACTCCGAGCGACGTGGGGAAATTGAACCGTTTGGTGATACCGAAGCAGCACGCGGAGAAGCACTTTCCGTTACAGAGCGGCGTTAATAATAATAACAACAACGGCGTTAGCGCCACGGCGGCGAAGGGAGTTTTGTTGAACTTCGAGGACGTTGGAGGGAAAGTGTGGCGGTTCCGTTACTCGTATTGGAACAGTAGCCAGAGCTACGTTTTGACAAAAGGTTGGAGCCGGTTCGTTAAGGAGAAGAATCTGAAAGCCGGTGACACGGTTTGTTTTCACCGGTCCACTGGACCGGACAGGCAGCTCTACATCGATTGGAAGACGAGGAATAATAATGTTGTTAACGAGGTTATTGGCGGGCTGTTTGGCCCGGTCGGACCGGTTGTCGAACCGATCCAGATGGTTCGGCTCTTCGGGGTTAACATTTTGAAGCTACCCGGTTCGGATTCTATTGTTGCGGCCAATAATAACAATAATGCAAGTGGGTGCTGCAATGGTAAGAGGAGAGAAATGGAACTGTTCTCGTTCGAGTGTAGCAAGAAACCCAAGATTATTGGTGCTTTGTAA 1227 0.5672 MDAISCMDESTTTDSLSMSLSPTSSMSEKTRPSSTILSSEKASMSPPPPSNTLCRVGSGASAVVDLDGGGGSGEVESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDIAAQRFRGKDAVTNFKPLAGDVGVDDDGESEFLNSHSKPEIVDMLRKHTYNDELEQSKRSRGVFERRRGGAAGAGPGVPISGACGMKARENLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSGVNNNNNNGVSATAAKGVLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDTVCFHRSTGPDRQLYIDWKTRNNNVVNEVIGGLFGPVGPVVEPIQMVRLFGVNILKLPGSDSIVAANNNNNASGCCNGKRREMELFSFECSKKPKIIGAL 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g0647 408 MobiDBLite consensus disorder prediction 1 57 - -
Aed11g0647 408 Gene3D AP2/ERF domain 83 140 IPR036955 GO:0003700|GO:0006355
Aed11g0647 408 CDD B3_DNA 215 315 IPR003340 GO:0003677
Aed11g0647 408 SUPERFAMILY DNA-binding domain 83 139 IPR016177 GO:0003677
Aed11g0647 408 Pfam AP2 domain 83 131 IPR001471 GO:0003700|GO:0006355
Aed11g0647 408 MobiDBLite consensus disorder prediction 1 87 - -
Aed11g0647 408 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 27 408 IPR044800 GO:0003700
Aed11g0647 408 CDD AP2 83 138 IPR001471 GO:0003700|GO:0006355
Aed11g0647 408 SMART rav1_2 84 145 IPR001471 GO:0003700|GO:0006355
Aed11g0647 408 ProSiteProfiles AP2/ERF domain profile. 84 139 IPR001471 GO:0003700|GO:0006355
Aed11g0647 408 PANTHER AP2/ERF AND B3 DOMAIN TRANSCRIPTION FACTOR 27 408 - -
Aed11g0647 408 Pfam B3 DNA binding domain 216 327 IPR003340 GO:0003677
Aed11g0647 408 SUPERFAMILY DNA-binding pseudobarrel domain 214 328 IPR015300 -
Aed11g0647 408 SMART B3_2 216 330 IPR003340 GO:0003677
Aed11g0647 408 ProSiteProfiles B3 DNA-binding domain profile. 216 330 IPR003340 GO:0003677
Aed11g0647 408 Gene3D - 205 337 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g0647 Aed-Chr11 6745620 6746846 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g0647 5 408 B3 DNA Binding Superfamily AT1G25560 57.702 2.76e-142 408
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-RAV Aed11g0647 B3 9.5e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g0647 K09287 - gmx:100801107 636.336