Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g0630 TTAATAATTCTTCCAAACGCGCGTTTCGATGAGTTCGTGCTGATTTGGGTTGCGACTGGAATAGCTGCTCTGATCAGACGACATGGGCTACGAAGTGGGCGTTTGTTTGTTAACTCCATGTTTGATGAATTTGAAATTATAGATGATAAAGAAGTATATGAGGAGTTTGGCAAGGGTAATCGTTTTCTTGGGTTCATGTTTGGAAATGTAGATAATTCTGGTGATCTCGATGCTTATTATCTTGACGAGGATGCAAAGGAGCATCTTTCTGCGTTAGCTGATAAGCTGGGTCCATCACTGACAGATATATATTTGTCAGGAAAATCACCACAAACACCACCTAACCTTGTTGAACAAGACTGCAATGAAAAAGCTGAAGATGCAGTTGATTATGAAGATATTGATGAAGAGTATGATGATCCAGAGACAGAAGCTGCCAATGAAGAGGACTATTTATTGCCAAAAAAGGATTTTTTCTCTGCTGAAGCCTCTGTATGTTTGGAGTCCAAAGCTTCTGTCTTTGATGATGAAAATTATGATGAAGAATCTGAAAAGGAGCAAGATTTTGTGAATGATGATTCTAAAATTGATGACATCTCTTTAGCTGGGGATCAGGAAGAGAGTTTTCTAGATGCATCTAAAGAAGAGAGTGCTCTTGAACATGAATTACATGTTGACTCACTGCAGACTGAAGAATTGGATGCTGAAGTACAAAAACTTGAGGAGGAAGAGCCTGAAGTTCAGAAAAGGCCTATGGCTATGCTGTTGCCTGTTTTATGTGTGGAAGATGGCTTGGAAATTTTACGCTTCTCTGAAATCTTTGGCATTCATGAACCTCTCAGAAAGGGAGAAAAGAGAGAGCATCAGCATTCCATTCCTAGAGTGTTTGACAGTGTGGCATCTTCCCTAATTGGCTTCCCCCATTTAACTGATGATATTGTAGAAGAGGATGAAGAGGAATTCCTTAAGGGATTGTCCCAGAGTCTCTCACTTATTAAACAGGTTTGTGTAGTTCATAATGACATATCAGAAAGCAATGGTGTTGACTTGGAGTTTCCAAAATTTGGATTTCTTCATGTGGATGCCTCAGTGGCCAGGAAAGATGATCAACAACTGGAGGACTCATGTCATAGTGCTGAACCAATGAAAGGGGATTTTGCAGAAGATCTTTCTTGGAAAGATCATCCTTTTACGTTGGCCAACATTTATCCTCATGATCAGCAAGACTGGGAAGATGAAATCCTTTGGGGCAATTCTCTTGTTCCAAGTAATAATAATGTTGAAAGCTGTGAAATTTCTGGACCTGAGTTGGGAGCTTCAAGTGGCAGTGAAATAGAAATTGAAAGTGGGATCCAGAAACTTCAGATGGAGCCCCAGAAGATACTGGAGGATAAATATCATAATGCCTTCATGTGCAACTTTCCTGCCTCATTGGAGCCCTTTGGCTCAAGGGATTCTTCTGGAGCTAAGACCAATTTAATATCCAGAAGTCTATTGCATCCCCAACATTTAAGGCTAGAATCCAAATCTGAAGTAAAGTGTTTTACCAAGGTTATAGCACAAAACAGAGACATGATGGAGAGTTCCTGGATAGACAAGATAATATGGGAAGAGCTTGATCAGCCTACGGTGAAACCAAAGCTTATCTTTGATCTGCAGGATGATCAAATGCAGTTTGAAGTTTTAGATAGCAAGGATAGTACACATCTTTGCCTTCATGCCGGGGCTATGATTATAACTCGTTCATTAAAATCAAGCAGTGAGGACTCTTCTGAGCTACTGGGACATGAAAGTCAATATGGATGGCGATATGTTGCTAATGACATACATTATTCAAACCGTACAACTTCTCAGCAACTTAAATCAAATTCTAAAAAATGCTCAGCTCATGGTGTCAAAGTCTTTCACTCACAACCTGCACTGAAGCTGCAAACGATGAAATTGAAGTTGAGCAATAAAGATATTGCAAATTTTCATCAGCCAAAAGCATTATGGTTTCCTCATGACAATGAGGTGGCTGTCAAAGAACAAGGGAAATTGCCAAAACAAGGTCCCATGAAAATTATTATTAAGAGCTTGGGTGGCAAGGGGAGTAAACTGCATGTTGGTGTTGAAGAAACTCTCGCTTCTGTTAAAGCAAAAGCTTCCAAAAAGCTAGATTTTAAGGCATCAGAATCAGTGAAAATATTTTATTTAGGGAGGGAGCTTGAAGATTGCAAATCACTTGCTGCACAAAATGTTCAACCAAACTCCTTGTTACATCTTGTTCGTACAAAGATACATTTGTGGTCAAAAGCACAAAAGGTTCCCGGTGAGAACAAATCATTGCATCCTCCAAGGGCATTCAAGAAAAAGTCTGATCTGTCAGTAAAAGATGGACATTCGTCACTTGAGACAAATATGTATCGAGCACCCATATTTCCTCATAAAGTTCCATTAACTGACTACCTGCTGGTTCGTTCATCAAAAGGAAAGCTATCATTAAGGCGCATTGATAAAATTAATGTTGTTGGACAGCAGGAGCCTCTAATGGAGGTATTATCTCCTGGAAGTAAAATTCTTCAGACTTACATGATGAACAGGCTATTGGTACACATGTGCCATGAATTTCAAGCAGCAGAGAAGCGACACTTGCTTCCATATATTTGTATTGATGAACTTCTCTCACAGTTTCCTTGCCAATCAGAAGTGTCATTCCGTAAGAGAATCAAGGAATATACCAATTTACAGAGAAGAAGAAATGGACAGTCAATTTTGGTTAAAAAGAGAAATTTTCGCATGTGGTCAGAGGATGAATTGAGAAAAATGGTCACACCAGAGCTTGTTTGTGCCTATGAAAGCATGCAAGCTGGCCTCTACCGTCTAAAACACTTAGGAATAACAGAAACACACCCTACTAATATTTCATCTGCAATGAGTCGGCTTCCTGATGAAGCAATAGCATTGGCTGCTGCATCACACATTGAGAGGGAACTTCAGATTACTCCTTGGAACCTGAGTAGCAATTTTGTTGCTTGTACAAGCCAGGGCAAGGAAAATATTGAACGAATGGAAATTACTGGTGTTGGTGATCCATCTGGTTGTGGCATGGGTTTCAGCTATGCTTGGGCACCTCCAAAGGCACTGGTGTCTAGTGCAATGGTGAAGAAGAAAGCAGCTTCTAACCGTGGAGGTTCTATTGTTACCTGTACAGATGCTGATCTACGTAGATTAAGCATGGAGGCGGCACGAGAGAGCTTAATGTTAATAAAGGCTTTTCTTTTTGTCAGTATTTTTTTTTTTCATTTTGTCCTGATTTTATTCCAAACATTTGTTTTGTTTTCTCTTGTATTTACAAGTAATTGCATAAGTAGAAAATTAATTTTTCACAACTCAATTTGGCTGTTACAGCAGCAGACCAAAGAGAAATGCCAGGAGATTTGGGATCGACAAGTTCAGAGTATGTCAGCTGTAAATGGTGATGAAAATGAGAGTGATTCAGAAGGGAATAGCGATCTGGATTCTTTTGCTGGTGATCTGGAAAATTTACTTGATGCTGAGGAGTGTAAAGAGGGAGAAAAGGGTACCAATGACTTAAAACATGATAAGGGAGATGGTGTTAAGGGTCTTAAAATGAGAAGACACCAAACTCTGGCTCAGGCAGAGGAGGAAATAGAAGATGAAGCAGCTGAGGCTGCTGAATTATGCAGGTTGCTTATGGATGATGACAAAGCTGAGAGGAAGAAAAAGAAGAAAGCTAAAAATATGGTGGAAGAAGCAAGATTGGTAACAAAGATGCAATCAAAATTTGCCTTTGATGTTGCTGAACAAGTTAAGCAAATAACAAATACTTTACAATTAGATGGAACTAATCCCTTGAAGGTGGATGTGATTCCAGATCTTAGGGAGGAGGAAAAATTTCCTATTAAAAAAAGCAAATCACTGAAGGTCAATAAAGCCAAGAATTATATTACACCTATTAGTCTTCCCAATAAAAAAATCAAATTGAATACAGGAGAAGGAATTAAGAATGGAACTAAATACATGGAAATAGTCTTCTTGATGCTTGTTCAGATGGCAATACATTATTGA 4071 0.3908 LIILPNARFDEFVLIWVATGIAALIRRHGLRSGRLFVNSMFDEFEIIDDKEVYEEFGKGNRFLGFMFGNVDNSGDLDAYYLDEDAKEHLSALADKLGPSLTDIYLSGKSPQTPPNLVEQDCNEKAEDAVDYEDIDEEYDDPETEAANEEDYLLPKKDFFSAEASVCLESKASVFDDENYDEESEKEQDFVNDDSKIDDISLAGDQEESFLDASKEESALEHELHVDSLQTEELDAEVQKLEEEEPEVQKRPMAMLLPVLCVEDGLEILRFSEIFGIHEPLRKGEKREHQHSIPRVFDSVASSLIGFPHLTDDIVEEDEEEFLKGLSQSLSLIKQVCVVHNDISESNGVDLEFPKFGFLHVDASVARKDDQQLEDSCHSAEPMKGDFAEDLSWKDHPFTLANIYPHDQQDWEDEILWGNSLVPSNNNVESCEISGPELGASSGSEIEIESGIQKLQMEPQKILEDKYHNAFMCNFPASLEPFGSRDSSGAKTNLISRSLLHPQHLRLESKSEVKCFTKVIAQNRDMMESSWIDKIIWEELDQPTVKPKLIFDLQDDQMQFEVLDSKDSTHLCLHAGAMIITRSLKSSSEDSSELLGHESQYGWRYVANDIHYSNRTTSQQLKSNSKKCSAHGVKVFHSQPALKLQTMKLKLSNKDIANFHQPKALWFPHDNEVAVKEQGKLPKQGPMKIIIKSLGGKGSKLHVGVEETLASVKAKASKKLDFKASESVKIFYLGRELEDCKSLAAQNVQPNSLLHLVRTKIHLWSKAQKVPGENKSLHPPRAFKKKSDLSVKDGHSSLETNMYRAPIFPHKVPLTDYLLVRSSKGKLSLRRIDKINVVGQQEPLMEVLSPGSKILQTYMMNRLLVHMCHEFQAAEKRHLLPYICIDELLSQFPCQSEVSFRKRIKEYTNLQRRRNGQSILVKKRNFRMWSEDELRKMVTPELVCAYESMQAGLYRLKHLGITETHPTNISSAMSRLPDEAIALAAASHIERELQITPWNLSSNFVACTSQGKENIERMEITGVGDPSGCGMGFSYAWAPPKALVSSAMVKKKAASNRGGSIVTCTDADLRRLSMEAARESLMLIKAFLFVSIFFFHFVLILFQTFVLFSLVFTSNCISRKLIFHNSIWLLQQQTKEKCQEIWDRQVQSMSAVNGDENESDSEGNSDLDSFAGDLENLLDAEECKEGEKGTNDLKHDKGDGVKGLKMRRHQTLAQAEEEIEDEAAEAAELCRLLMDDDKAERKKKKKAKNMVEEARLVTKMQSKFAFDVAEQVKQITNTLQLDGTNPLKVDVIPDLREEEKFPIKKSKSLKVNKAKNYITPISLPNKKIKLNTGEGIKNGTKYMEIVFLMLVQMAIHY 1356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g0630 1356 Pfam Ubiquitin family 688 758 IPR000626 GO:0005515
Aed11g0630 1356 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 795 1239 IPR040240 GO:0001091|GO:0004402|GO:0005669|GO:0006366|GO:0017025
Aed11g0630 1356 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 50 795 IPR040240 GO:0001091|GO:0004402|GO:0005669|GO:0006366|GO:0017025
Aed11g0630 1356 Pfam Protein of unknown function (DUF3591) 795 1080 IPR022591 -
Aed11g0630 1356 MobiDBLite consensus disorder prediction 1184 1204 - -
Aed11g0630 1356 ProSiteProfiles Ubiquitin domain profile. 686 756 IPR000626 GO:0005515
Aed11g0630 1356 Pfam Protein of unknown function (DUF3591) 606 793 IPR022591 -
Aed11g0630 1356 SUPERFAMILY Ubiquitin-like 679 757 IPR029071 -
Aed11g0630 1356 Pfam TATA box-binding protein binding 58 93 IPR009067 -
Aed11g0630 1356 Coils Coil 223 250 - -
Aed11g0630 1356 PANTHER BNAA01G26290D PROTEIN 795 1239 - -
Aed11g0630 1356 PANTHER BNAA01G26290D PROTEIN 50 795 - -
Aed11g0630 1356 CDD Ubl_TAFs_like 686 757 - -
Aed11g0630 1356 MobiDBLite consensus disorder prediction 770 789 - -
Aed11g0630 1356 SUPERFAMILY TAF(II)230 TBP-binding fragment 57 94 IPR036741 -
Aed11g0630 1356 SMART ubq_7 686 758 IPR000626 GO:0005515
Aed11g0630 1356 Coils Coil 1211 1231 - -
Aed11g0630 1356 Gene3D - 668 758 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g0630 Aed-Chr11 6451223 6477182 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g0630 686 756 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 38.028 4.27e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g0630 K03125 - gmx:100780733 1814.66