Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g0612 ATGAGCGGCGATGGCCGGAGACGTGACCGGAGAGACAACAGAGCACCGAAGAAGCGGAAGCTGAACCGCACTCCGGAGGAAGAGCTCGAAGCAAAATTAGGGTTCGATCTCTTCTCAGAGGGCGAAAAGCGTCTCGGATGGTTACTCACTTATGCATCCTCATCTGTTGACGATGAAGACAGTTACAAAGTGTACAGTTGCGTTGATCTTTACTTTGTTGCACAGGATGGCTCTTCATTCAAGGCAAAATTCAGATTTCGGCCTTATTTCTATGTAGCTGCAAAGGTAAGTGAGAACATTCATGTGCGCCAAATGCAGGGGCATGGCAGCATATCTGGGTTTAAGTGCACGTGTAAAAACCATTTATCTGGGTTAAGAAAATCTTATTTAAAGCTTTCATTTGATACGGTGCAACAATTGATGGATGTGAAGAGAGACTTGATGCCTACTGTTGAAAGAAATAAGGCCAAGTCTGATGCTTCAGAAGCCTTTTTGTTCATAGAACATAAACCTCAGGATTTTCTAGATTGCATAACTGATATTCGTGAATATGATGTTCCTTATCATATTCGCTTTGCCATTGACAATGATATACGGTGTGGCCAATGGTATGATGTTGGAGTGTCCAGTAATGGGGTTACACTTGAGAAGACAGATCTTCTGCAGCGTGCTGAAGTTCGTATTTGTGCATTTGACATTAAGACCACAAAACTTCCATTAAAATTTCCTGATGCTGATTATGATTTAGTTATGATGATTTCATACATGGTAGATGGTCAAGGGTATTTAATCATAAATAGAGAGTATAACTATGGAGGAATACAAGCAAAGTCTGATGAAACTGTAAATGATGAATCTCAAGTAGACATTTTATCGAGCTGGAATATTGCTGAATACTTGCCAGAAAAATTCAGAGACCATTTTGTTTTAATCGTTTCTCAATTCATGTATTTTCCCTGGGAACATGCAAAAAATCAAGCACAAATCAGGGCCTCGTTGCAGAATGGCAACTCCTGTACCCCATCAATTAACATTGGAGTTGCAGAGGCTTTTGAATCAGAAATAACGGAATTTATCAAAGGGCAGATTGGCTCTTACTTCACACACAAACTGCTAGGAATTGTTCACCATTTTGGACTTCATATGAAGGGGATGAACAAATCAGAGAATAATCAGAGTATTTCAGGTCTTGAGAAGGAATTTGCTCCAGAAGCCAAGTTTCATGGTCCTGCTATTGTAATGACTGCAAAGACTTGGACTTGTGCCAGTGATTCGGATTTATTAACCAAGGAGTGGCATTGTGCGGTGCCGCAGTGTGGCCAGCCTTATGACTGCGAGGTGATGGAAAACGCGCTTCTTCAAACTGTAAGACAAAGAGAACAGCTATACCACCTGCAAGATCTGGTGTGTACAAGGTGCTATCAGGTGAAAGCTGCACATTTGGCTGAGCAATGTGCATGTGCAGGCTCATTTAGGTGCAAGGAAGATGCAAGTGAATTTCGTGAAAAAATGCAACTTTTCTTTAACATAGCTTCTCGTCAGAAATTCCAACTTCTCCAAGAATGTACCTCTTGGATTTTAGAACTTAGATAG 1593 0.4105 MSGDGRRRDRRDNRAPKKRKLNRTPEEELEAKLGFDLFSEGEKRLGWLLTYASSSVDDEDSYKVYSCVDLYFVAQDGSSFKAKFRFRPYFYVAAKVSENIHVRQMQGHGSISGFKCTCKNHLSGLRKSYLKLSFDTVQQLMDVKRDLMPTVERNKAKSDASEAFLFIEHKPQDFLDCITDIREYDVPYHIRFAIDNDIRCGQWYDVGVSSNGVTLEKTDLLQRAEVRICAFDIKTTKLPLKFPDADYDLVMMISYMVDGQGYLIINREYNYGGIQAKSDETVNDESQVDILSSWNIAEYLPEKFRDHFVLIVSQFMYFPWEHAKNQAQIRASLQNGNSCTPSINIGVAEAFESEITEFIKGQIGSYFTHKLLGIVHHFGLHMKGMNKSENNQSISGLEKEFAPEAKFHGPAIVMTAKTWTCASDSDLLTKEWHCAVPQCGQPYDCEVMENALLQTVRQREQLYHLQDLVCTRCYQVKAAHLAEQCACAGSFRCKEDASEFREKMQLFFNIASRQKFQLLQECTSWILELR 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g0612 530 SUPERFAMILY Ribonuclease H-like 66 297 IPR012337 -
Aed11g0612 530 PANTHER DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A 32 268 IPR029703 GO:0003677|GO:0003887|GO:0006260|GO:0006281|GO:0008622
Aed11g0612 530 PANTHER DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A 268 527 IPR029703 GO:0003677|GO:0003887|GO:0006260|GO:0006281|GO:0008622
Aed11g0612 530 Gene3D - 223 302 IPR036397 GO:0003676
Aed11g0612 530 MobiDBLite consensus disorder prediction 1 26 - -
Aed11g0612 530 Pfam DNA polymerase family B, exonuclease domain 74 291 IPR006133 -
Aed11g0612 530 Gene3D DNA Polymerase, chain B, domain 1 49 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g0612 Aed-Chr11 6340845 6349855 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g0612 263 396 Core DNA Replication Machinery Family AT1G08260 32.090 1.34e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g0612 K02324 - gmx:100812003 440.269