Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g0581 ATGGTGACCAAGTACCTAACTCTGATTTACACTCATCTCAAATGGGTATTTGATTTTCTTCTCTACTACCCCTTTTACATGCTCCATGCTCCTCAACCACTCATAAAACTTGGAACTGAATTGAGTACATTTCACTATGATTTCACCAACAATAATGGCACAGAGGAAGAACATGATCATGTGGATTGTGCTGTGTGTCTCAACAAAATTAGAGAAGGAGATGAGGTTACTGGAGTCATCAAATGTGACCATGTCTTTCACAAAGGTTGTTTGGATGGATGGATTGGTTTCAAGAACGCCACGTGTCCTCTTTGCAGAGGATCAGTGGCTCCTCCAACAAGCCCTATCATCACTAACTCTGGAGCTGAGGTTTTGTTGTTCAAGTTTTGCTCTGTGCAAGAGGCTAATAGATATGATCGAAGGAAGCCCTGCTTTATGTAA 441 0.415 MVTKYLTLIYTHLKWVFDFLLYYPFYMLHAPQPLIKLGTELSTFHYDFTNNNGTEEEHDHVDCAVCLNKIREGDEVTGVIKCDHVFHKGCLDGWIGFKNATCPLCRGSVAPPTSPIITNSGAEVLLFKFCSVQEANRYDRRKPCFM 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g0581 146 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 137 - -
Aed11g0581 146 SMART ring_2 63 105 IPR001841 -
Aed11g0581 146 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED 1 137 - -
Aed11g0581 146 CDD RING-H2 63 106 - -
Aed11g0581 146 SUPERFAMILY RING/U-box 56 113 - -
Aed11g0581 146 Pfam Ring finger domain 62 106 IPR001841 -
Aed11g0581 146 ProSiteProfiles Zinc finger RING-type profile. 63 106 IPR001841 -
Aed11g0581 146 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 40 113 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g0581 Aed-Chr11 5461891 5462863 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g0581 62 111 C3H Transcription Factor Family AT1G15100 54.000 6.50e-14 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g0581 K16282 - vvi:104878972 105.916