Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g0580 ATGAAAGACATCAGCAGCAGATTCCACCACATTAATGAAGAGAGGCGCACGTTTGAATTACGCTCTGGTGTCACGGAGAAGCATGGAGATGATGATAAAGACGATGATTGGCGCCAAACTAGCTCTATTATTCCTGCTGAACACATATCTGTCAATATGTCTGCCTTCAAGAAAGTTGAATCCTTGCGGACTTTTCTTCATTTTCGATATACTTCTCAGTTGCCATCAAACCGTCATCTTCGAGCATTACGCACAATATCTCATCTGATTTCCCCAGTAAAGGATTTAGCACATTTGCGATACTTGAATTTGCATGGAAATTTCTCGGGCACAAGCTTGCCTAATTTTATCTGTGGGCTGAAGAAATTGCAAACATTGAAACTAGAATATTTTTTCTCGCCTAATTTGTTGCCTAAAAACTTGACACAATTACAGGATCTAAGACATATTGTGATGAATCGGTGTGATCCAATAGCAGAGATGCCTATGAATATGGGCAAGCTAAATCACCTAAGAACATTGAGCACTTTCACAGTGGGTTCAAAGCCAGGATATGGGTTGGGAGAGTTGCATGACTTGAAGCTGGGAGGCAAGCTGCATATCGGAGGCCTTGAGAATGTTCCCAGTGAATCAGATGCTACACAAGCAAATTTGATCAGTGACTCCAACGTTAAATTCCCACGTCTTCCTTCTGCCGAGCACCTTGATGCCAGTCGCGTTGAGGACGCGGATTCCTTCATGGAAGGCGTTGTGGGGAAAATGCCTTGTCTAAAGACCCTGAGCATGTGGTCCTTTAGAAAACTCAAGGTACTACCCGACCAACTCAGCAGTCAGGGTGTGCTACAGGTACTAACCATTAGTGATTGTGATGAACTGGAGTATCTTCCGGAACATGTGTTACAAGGTCTAACCTCTCTACGAACTTTGTACATTTCCTCATGTCATAAATTGAAATCGATATCTGAAGGCGTGGGACATTTAGCTTGTCTTGAGCGTTTTACTATCGACAACTGTCGAGAGCTGGTGGCTCTACCAAGCAATATGAACCAACTAACTGCCCTTCGGATGGTGGCAATTGAGCGGGGTTCCATGTTACCAGAAGGCTTACAGCGTATCCCCTCCCTACAGACTTTGGGGATTGAGCGTTGTTCATGTAGTTCATTACCAGACTGGTTGGGAGACATCACTTCTCTTCGGGAATTAAGGATCTATAATTGCACCGAGTTGAGGTCACTGCCAAGTAGCTTTCAACGTCTCACCAACTTGTGTAAACTAACCATTATGGGTTGCCCTCTGCTTGAAAAGCGGTGTAAGAAGGGGACAGGGGAAGACTGGCAATACATAGCACACATTCCAGAACTGGATCTGAGTTTCCCACCTAAACCGACATTTTTAGAAATTGGAGAAGAACATGTCGATTGTGCTGTGTGTCTCAACAAAATTGGAGAAGGAGATGAGGTTATTAGAGTCATGAGATGTGACCATGTTTTTCACAAAGCTTGTTTGCATAAGAATGCCACGTGTCCTCTTTGCAGAGGATCAGTGGCTCCAACTGTGCCTATCACAAACAAGCACCGACACATGGTGGCTACGTTGAGTTATTCACTTCTTTCGTGCCTTTTTTAG 1626 0.4403 MKDISSRFHHINEERRTFELRSGVTEKHGDDDKDDDWRQTSSIIPAEHISVNMSAFKKVESLRTFLHFRYTSQLPSNRHLRALRTISHLISPVKDLAHLRYLNLHGNFSGTSLPNFICGLKKLQTLKLEYFFSPNLLPKNLTQLQDLRHIVMNRCDPIAEMPMNMGKLNHLRTLSTFTVGSKPGYGLGELHDLKLGGKLHIGGLENVPSESDATQANLISDSNVKFPRLPSAEHLDASRVEDADSFMEGVVGKMPCLKTLSMWSFRKLKVLPDQLSSQGVLQVLTISDCDELEYLPEHVLQGLTSLRTLYISSCHKLKSISEGVGHLACLERFTIDNCRELVALPSNMNQLTALRMVAIERGSMLPEGLQRIPSLQTLGIERCSCSSLPDWLGDITSLRELRIYNCTELRSLPSSFQRLTNLCKLTIMGCPLLEKRCKKGTGEDWQYIAHIPELDLSFPPKPTFLEIGEEHVDCAVCLNKIGEGDEVIRVMRCDHVFHKACLHKNATCPLCRGSVAPTVPITNKHRHMVATLSYSLLSCLF 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g0580 541 SMART ring_2 474 511 IPR001841 -
Aed11g0580 541 SUPERFAMILY RING/U-box 467 524 - -
Aed11g0580 541 Gene3D Ribonuclease Inhibitor 60 361 IPR032675 -
Aed11g0580 541 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN SOG2 84 175 - -
Aed11g0580 541 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN SOG2 365 478 - -
Aed11g0580 541 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN SOG2 248 359 - -
Aed11g0580 541 SUPERFAMILY L domain-like 84 177 - -
Aed11g0580 541 Gene3D Ribonuclease Inhibitor 362 443 IPR032675 -
Aed11g0580 541 Pfam RING-like zinc finger 473 502 IPR001841 -
Aed11g0580 541 SUPERFAMILY RNI-like 230 432 - -
Aed11g0580 541 PANTHER LEUCINE RICH REPEAT CONTAINING PROTEIN 365 478 - -
Aed11g0580 541 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 445 518 IPR013083 -
Aed11g0580 541 ProSiteProfiles Zinc finger RING-type profile. 474 512 IPR001841 -
Aed11g0580 541 PANTHER LEUCINE RICH REPEAT CONTAINING PROTEIN 84 175 - -
Aed11g0580 541 PANTHER LEUCINE RICH REPEAT CONTAINING PROTEIN 248 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g0580 Aed-Chr11 5455466 5459235 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g0580 447 512 C3H Transcription Factor Family AT5G41430 40.000 8.31e-10 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g0580 - - var:108334567 317.39