Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g0579 ATGATGTTGTTTTGCTCCAATAATTTCGCTGAATCATCATATCATCATCCACTACTGCAGGCACCATCATCCATGCCTCCAAGTTTCATCAACACACTAGATTACTCTCTAGACCAACATCATTTGTATGCACCAAATCAACAACATCTCATGAAGTTCCAAGGTTGTTCTGGTGGTGGTGATGAACACAACGAAGATGGATCGATATTGGTGGATTACATGCCTCAAACACCACCTCCACCACCCCCACATGGTTTCTATGGTGGTGCTAGTGGTGGTGGTGGTGGTGGCACAACATCCTATGACAAGCTGAGTTTTGCAGATGTGATGCAGTTTGCTGATTTTGGACCAAAGCTTGCTTTGAACCAAGGAAAGAACTGTGAAGAGAATGCAATAGACCCGGTTTATTTTTTGAAGTTTCCTGTGTTGAATGACAAAATGGAGGAGGATCATCATCATCACCACAACATGATGGTGAACAATGATCATGATGATGCTGATCAAGGAGAAAATCACAATGGTGATGACGAAGACGATGACGAGAGGTTCAACTTGATTGGTGTGGATCAAGACAAAGATCACGAGGGGATGATGATGATGAGAGATGATGAAGAGACTACTCGAGTCTCTGGTGACGACAACAACAACTCGGTACAGATTCATCGTCAGCAGAAGAAGAATGGTGCTGCGGAGAACAAGAACAACAAGAGGAAGAGGCCAAGGACTGTTAAGACAACTGAGGAGGTTGAAAGCCAGCGCATGACTCACATAGCGGTTGAAAGAAACCGTAGGAAGCAAATGAATGAGCATCTTCGTGTCCTTAGATCCCTCATGCCTGGTTCATACGTCCAAAGGTTTGTGAGGGAATTGGAGCAACTTCTTCAATGTTTGGAGTCACAAAAGAGGAGAAGGCTACTAGGAGAAGCTCAAGCAAGACAACAAGTTGGGGATCCATCTCTTGCAACACAACAACAACAACAACCTCCATTCTTTCCACCTCTGCCTGTTCCAAACGAGCAGATGAAGCTTGTGGAGATGGCGGCGGAGACTGGCCTCCGCGAAGAAACCGCGGAGAGCAAGTCTTGTTTGGCCGATGTCGAAGTGAAGCTTCTGGGATTTGATGCCATGATCAAAATCCTATCAAGGAGGAGGCCAGGCCAGTTGATCAAGACCATTGCTGCACTTGAAGATCTTCAACTTATCATCCTCCACACCAACATCACCACCATTGAACAAACAGTTCTTTATTCATTCAATGTCAAGGTGGCTAGTGATTCAAGGTTCACGGCAGAAGATATAGCCAGCTCCGTCCAGCAGATATTCAATTTTATTCATGCAAACACTAGCATGTGA 1353 0.4501 MMLFCSNNFAESSYHHPLLQAPSSMPPSFINTLDYSLDQHHLYAPNQQHLMKFQGCSGGGDEHNEDGSILVDYMPQTPPPPPPHGFYGGASGGGGGGTTSYDKLSFADVMQFADFGPKLALNQGKNCEENAIDPVYFLKFPVLNDKMEEDHHHHHNMMVNNDHDDADQGENHNGDDEDDDERFNLIGVDQDKDHEGMMMMRDDEETTRVSGDDNNNSVQIHRQQKKNGAAENKNNKRKRPRTVKTTEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRFVRELEQLLQCLESQKRRRLLGEAQARQQVGDPSLATQQQQQPPFFPPLPVPNEQMKLVEMAAETGLREETAESKSCLADVEVKLLGFDAMIKILSRRRPGQLIKTIAALEDLQLIILHTNITTIEQTVLYSFNVKVASDSRFTAEDIASSVQQIFNFIHANTSM 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g0579 450 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 251 308 IPR036638 GO:0046983
Aed11g0579 450 Coils Coil 283 303 - -
Aed11g0579 450 PANTHER TRANSCRIPTION FACTOR FAMA 64 450 - -
Aed11g0579 450 MobiDBLite consensus disorder prediction 156 170 - -
Aed11g0579 450 MobiDBLite consensus disorder prediction 211 225 - -
Aed11g0579 450 Pfam Helix-loop-helix DNA-binding domain 252 289 IPR011598 GO:0046983
Aed11g0579 450 MobiDBLite consensus disorder prediction 204 253 - -
Aed11g0579 450 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 251 306 IPR011598 GO:0046983
Aed11g0579 450 MobiDBLite consensus disorder prediction 156 183 - -
Aed11g0579 450 Gene3D - 252 351 IPR036638 GO:0046983
Aed11g0579 450 CDD ACT_UUR-ACR-like 376 440 - -
Aed11g0579 450 MobiDBLite consensus disorder prediction 226 253 - -
Aed11g0579 450 PANTHER TRANSCRIPTION FACTOR FAMA 64 450 IPR044283 GO:0003700|GO:0010052
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g0579 Aed-Chr11 5440399 5443061 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g0579 44 450 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G24140 52.403 1.10e-129 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aed11g0579 HLH 1.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g0579 - - gmx:100793349 552.362