Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g0492 ATGGAATCTTGGAGTTATGTTCCTGAAGAGAAAGGCTATTTGTTTTCTGATGAAATGGATTTTTCACTTGATGCTTTCATGAGAAGTAGAAAACCATTGGTTGAATGGGACAACAAATCCAACTTTGAGAGAGATGGATTCAATAATTCCGACAGAGAGGTGGTTAAAAACATGGAATTTGTGGATTTAGGATTCCCTGACTTGTTGCAAAAGTCTTTAGAGACATCTAGCTATGAACTAGATAGTAATAATTCTAGTAAAAGAGGGAATTCCTCTACACATGTCATTGCTTTGAATTCTTCTTCTATGGGGGAAGAAGAATCTGATTCCAAGCATTGGAGTTCTCTAGTTGAATCCAAGACTCATGATTCTTCACTGATTGATCTGAAGCTAGGGAGATTAGCAGATTGTAAAGGTGCAAAAGAAAGGTTCACTTTAACATCTATACATCCAACCACCGTGCTTTCAAAGAGAGCTCGCACTTCCAACTTGCCTGTACAGGCTCCTGTATGTCAAGTTTATGGTTGTAACATGGATCTTAGCTCCTCAAAAGATTACCACAAGAGGCATAAAGTTTGTGATGCTCACTCCAAAACAGCCAAAGTTATTGTAAATGGCATTGAACAAAGGTTTTGTCAGCAGTGCAGCAGGTTCCATTTGCTAGCTGAGTTCGATGATGGTAAGCGCAGTTGTCGCAGGCGTCTAGCAGGACACAATGAACGCCGAAGGAAACCCCAATTTGATTACATGGCTGGTAAACAACACAAGATTCTTCAGTCATATCAAGGTGCAAAGTATCTGGGGTCTTCATTACAGAACAAACCCCAGTTTCCCTTTCAAGACATATTTCAAAGCGGAATCCTTTTCCCCGGAAAGCATGCTCAAATCTCTCAGAGTGGACACATCAAACTGGAAGAGGACTCGATTTACAGTTCCCAACTTGCTGCACCTGTCACACTTGATCAGGAATTATCAAGCTGTGCTCTCTCTCTTCTGTCAGATGATCAGTCACAGTATCCATCGCGCCACGCAGCAGGCAATCCGTTAGCCAGTCCCCAAGCCTTTCATGGCATCCGCATGCCTGACAGAGATGGCCAAGTTTCTGAAACGCCTCTGAGGATAAACGCTGCCGATGAATATGCACCAAATGAGTCCTTTCCATGTAGTAATACTCATGGAGATGATATTAGCCAACCATCAGAGTCGTTCGACGCCAAAAGCCGTCTTTCCTTGGAACATGGAGCTGCCACTGTTGATCTGTTCCAGTTGTCCTCACATCTTCAGAGGGTGGAGCAGCAGAGAAATTCTGTTTTGGTGAAGTGGGAAAATGAGGACTACTGTTTCCCAACTGTGTGA 1356 0.4299 MESWSYVPEEKGYLFSDEMDFSLDAFMRSRKPLVEWDNKSNFERDGFNNSDREVVKNMEFVDLGFPDLLQKSLETSSYELDSNNSSKRGNSSTHVIALNSSSMGEEESDSKHWSSLVESKTHDSSLIDLKLGRLADCKGAKERFTLTSIHPTTVLSKRARTSNLPVQAPVCQVYGCNMDLSSSKDYHKRHKVCDAHSKTAKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRRRLAGHNERRRKPQFDYMAGKQHKILQSYQGAKYLGSSLQNKPQFPFQDIFQSGILFPGKHAQISQSGHIKLEEDSIYSSQLAAPVTLDQELSSCALSLLSDDQSQYPSRHAAGNPLASPQAFHGIRMPDRDGQVSETPLRINAADEYAPNESFPCSNTHGDDISQPSESFDAKSRLSLEHGAATVDLFQLSSHLQRVEQQRNSVLVKWENEDYCFPTV 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g0492 451 Pfam SBP domain 171 244 IPR004333 GO:0003677
Aed11g0492 451 ProSiteProfiles Zinc finger SBP-type profile. 168 245 IPR004333 GO:0003677
Aed11g0492 451 Gene3D - 163 232 IPR036893 GO:0003677|GO:0005634
Aed11g0492 451 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 45 450 IPR044817 GO:0003677
Aed11g0492 451 SUPERFAMILY SBT domain 169 250 IPR036893 GO:0003677|GO:0005634
Aed11g0492 451 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 45 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g0492 Aed-Chr11 4291458 4296309 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g0492 1 449 SBP-box Gene Family AT1G69170 36.134 7.24e-66 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Aed11g0492 SBP 9.4e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g0492 - - gmx:100820149 749.969