Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g0490 ATGAACCACGAAGACAAACTCACCATGGACCTGGTTCCACCATCTGAACACCTCTGCTACGTTCGTTGCAACTTCTGCAACACTGTCCTCGCGGTTGGTATCCCATGCAAGAGGCTGTTGGACACTGTGACAGTGAAGTGTGGTCACTGCAGCAATCTCTCTTTTCTGAGCACCAGACCCCCAAATTCTCAAAGCCAAAGCATTGATCACACCCACCTCAGTCTCCAGGGGTTTTACAGTAATGCCAAAAAGGGACAAGCATCATCTTCATCTTCCTCACCAACAACATCCAATGAGTCAGTGTCCCCAAAAGCAGCATCATTTGTTGTGAAACCACCTGAGAAAAAGCACCGTCTCCCTTCTGCTTACAACCGTTTCATGAAAGAGGAGATACAGCGCATCAAAGCAGCGAACCCTGAGATCCCACATCGAGAAGCTTTCAGTGCTGCAGCGAAAAATTGGGCTAGGTTCATTCCAAATTCACCAACCAGTTCAGTTTCTGCAACTAAAGTTAATACTGATTGA 525 0.4705 MNHEDKLTMDLVPPSEHLCYVRCNFCNTVLAVGIPCKRLLDTVTVKCGHCSNLSFLSTRPPNSQSQSIDHTHLSLQGFYSNAKKGQASSSSSSPTTSNESVSPKAASFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARFIPNSPTSSVSATKVNTD 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g0490 174 SUPERFAMILY HMG-box 101 155 IPR036910 -
Aed11g0490 174 CDD HMGB-UBF_HMG-box 118 154 - -
Aed11g0490 174 MobiDBLite consensus disorder prediction 81 104 - -
Aed11g0490 174 Pfam YABBY protein 14 157 IPR006780 GO:0007275
Aed11g0490 174 PANTHER PROTEIN CRABS CLAW 7 170 - -
Aed11g0490 174 PANTHER PROTEIN YABBY 6-RELATED 7 170 IPR006780 GO:0007275
Aed11g0490 174 MobiDBLite consensus disorder prediction 81 113 - -
Aed11g0490 174 Gene3D High mobility group box domain 90 161 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g0490 Aed-Chr11 4275387 4277843 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g0490 1 168 C2C2-YABBY Transcription Factor Family AT1G69180 63.953 5.39e-66 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Aed11g0490 YABBY 1.3e-56 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g0490 K25796 - gmx:100795791 340.887
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g0490 11 4275387 4277843 Aed11g0490 11 4275387 4277843 ECH