Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g0478 ATGGCGACGACGATGCAAGGCGTGCAGAAGAACACGCTATACGTGGGAGGCTTAGCAGAAGAAGTAAACGAGTCGATCCTCCACGCGGCGTTCATTCCTTTCGGCGACATCAAGGACGTGAAGACGCCGTTAGACCAAGCCACGCAGAAGCACCGCTCCTTCGGCTTCGTCACCTTCCTCGAACGCGAAGACGCCGCCACCGCAATGGACAACATGGACGGCGCCGAGCTCTATGGCCGCGTCCTCACCGTCAACTACGCCCTCCCCGAACGCATCAAGGGAGGAGAGCAGGGCTGGGCCGCCCAGCCCATTTGGGCGGATGCGGATACCTGGTTTGAGCGGCAGCAGCAAGAGGAGGAGATGAAACGGATTGAGGCGGAGAATCGTGCGGCGTTGCAGGCAGCGGAAGACTTGCATCGGAAGCAAGTGACAGAGCAGCGAGAGGGAGAGAAGGAAGAGGAGATTGAGATCAAGGATGATCCTATGGCCAAGGCTGAAGAGGAGGTTCTTGAAAATCAATGA 522 0.5805 MATTMQGVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEREDAATAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMKRIEAENRAALQAAEDLHRKQVTEQREGEKEEEIEIKDDPMAKAEEEVLENQ 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g0478 173 CDD RRM_PPIE 13 85 IPR034168 GO:0003723
Aed11g0478 173 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 13 82 IPR000504 GO:0003723
Aed11g0478 173 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 11 89 IPR000504 GO:0003723
Aed11g0478 173 PANTHER TRANSFORMER-2-RELATED 6 172 - -
Aed11g0478 173 SUPERFAMILY RNA-binding domain, RBD 8 98 IPR035979 GO:0003676
Aed11g0478 173 SMART rrm1_1 12 85 IPR000504 GO:0003723
Aed11g0478 173 Coils Coil 114 141 - -
Aed11g0478 173 MobiDBLite consensus disorder prediction 116 173 - -
Aed11g0478 173 Gene3D - 3 150 IPR012677 -
Aed11g0478 173 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE E 6 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g0478 Aed-Chr11 4146110 4147784 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g0478 11 89 Eukaryotic Initiation Factors Gene Family AT3G11400 37.975 3.44e-11 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g0478 - K09564 gmx:100809447 316.62