Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g0453 ATGGCAAAAAAAGCTATCTTTTTCCCTCTTCCCAACAGACACTTTTCTTCTTCCTCCACCACACCAGAAACCCCAACCCTCTACTCCTTCCTCCAGCCCTCACTCTTCACCCTCACCAAAAACCAACCCCAACCCATTTCAGATCCTTCTCCAAAGCCCCAAACTTGCCTCTCCACACTCCAAACAACCCTCCACAAGTCCCTCATAAGTAGCAACACCGACGAAGCATGGAAGTCCTTCAAAGCCCTCACAAGCCACCACTCCTTCCCTCCCAAAGCCCTCACCAACACCCTCCTCACCCACCTCTCCTCCCTCGGCGACACCCTCAACCTCAAGAGAGCCTTTGCCTCCACCCTCTTCCTCATTCAAAAAAACCCCATGCTCATTGACCATACTACCCTCCACCACATGCTTCTTTCAATGAGGGATGCCAACACTGCTGCCCCTGCCTTTGCACTTGTCAGGTGCATGCTCAAGAACAGGCTATTTGTCCCCTTTCATCTCTGGGGCCCTGTGATGGTTCAAATCAGTAGGAAAAATCACAACTTTGCTGCTTTTGTGAGGCTTTTTGAGGAGAATTGTAGGGTTGCTTTGGTTGAGAGGGTTGAGTTCATGAGGCCTGATGTTGGTTCTTGCAATGCTGCTCTTGAGGGTTGCTGCTGTGAGCTTGAGTCTGTTAGTGATGCTGAGAGGGTTGTTGGGATGATGTCTGATTTAGGAGTTAGGCCTGATGAGTTTAGTTTTGGGTTTCTTGGGTATTTGTATGCACTCAAGGGGTTGCATGAGAAGATTGGTGAGTTGGAGACTTTGATGGGGGGGTTTGGTTGTTTAAACAAGAAGGGGTTCTATTGTAGTTTGGTTAGTGGGTATGTTAAGTCAGGGGATTTGGCTTCTGTGGAGGCGACTTTTGTTAAATGTTTGAGTGATGGAGGAGGCGGTTTTGGTGTCAAAACTTTCTGTGAAGTGGTTGAGGCTTATTTTGAGAAGGGCAATGTCAAGGGGTTGGCTGGTTTGATTATCGAAGCTCAGAGGCTAGAGGATTTGAATGTTGTGGTTGATGAGTCTGTAGGGTATGGTGTTGTTAATGCGTGTGTTAGTATTGGACTGTCGGATAAAGCGCACAGCATTGTTGATGAGATGAATGCTCTTGGGGCTTCTGTGGGTCTTGGGGTCTATGTACCTATCTTGAAGGCTTACTGCAAGGAGAATAGAACTGCTGAGGCTACTCAATTGGTGGCAGAGATTAGCAATTCGGGTCTTCAGTTGGATGTGGGAATGTATGATGCTTTGATAGAAGCGTCCATGTGCGGCCAGGATTTTCAGTCGGCATTTTTGCTGTTTAGGGACATGAGAGAGGCGAGGATTCCTGACTTGAAAGGGGGTTACTTGACTATAATGACGAGTTTGATGGAGAATCATCGGCCTGAGTTGATGGCGGCTTTCTTAGATGAGGTGGTTGAGGACCCTAGGGTTGACGTTGGTACTCATGATTGGAATTCTATCATCCATGCTTTCTGTAAGGCTGGGAGACTCGAAGATGCCAGACGGACTTTCAGAAGGATGATGTTCCTGCAGTTTGAGCCGAATGATCAGACATACTTGTCCATGATTAATGGATATGTCTTGGCAGAGAAATATTTTCTCGTGCTGATGTTGTGGAACGAGGTTAAGTGGAAGCTGTCTGTGGATGGACAGAATGGGATCAAGTTTGACCAGAATTTGGTTGATGCATTCCTGTATGCTATGGTCAAGGGAGGTTTCTTTGATGCTGTTATGCAAGTTGTGGAGAGAGCTAGTGAGATGAAAATATTTGTTGATAAGTGGAGATACAAGCAAGCATTCATGGAGACTCATAAAAAGCTCAAAGTGGCAAAGTTAAGGAAAAGGAATTTTAAAAAAAAGGAAGCGCTGATTGCATTCAAGAACTGGGCTGGCTTAAATGCATGA 1947 0.4628 MAKKAIFFPLPNRHFSSSSTTPETPTLYSFLQPSLFTLTKNQPQPISDPSPKPQTCLSTLQTTLHKSLISSNTDEAWKSFKALTSHHSFPPKALTNTLLTHLSSLGDTLNLKRAFASTLFLIQKNPMLIDHTTLHHMLLSMRDANTAAPAFALVRCMLKNRLFVPFHLWGPVMVQISRKNHNFAAFVRLFEENCRVALVERVEFMRPDVGSCNAALEGCCCELESVSDAERVVGMMSDLGVRPDEFSFGFLGYLYALKGLHEKIGELETLMGGFGCLNKKGFYCSLVSGYVKSGDLASVEATFVKCLSDGGGGFGVKTFCEVVEAYFEKGNVKGLAGLIIEAQRLEDLNVVVDESVGYGVVNACVSIGLSDKAHSIVDEMNALGASVGLGVYVPILKAYCKENRTAEATQLVAEISNSGLQLDVGMYDALIEASMCGQDFQSAFLLFRDMREARIPDLKGGYLTIMTSLMENHRPELMAAFLDEVVEDPRVDVGTHDWNSIIHAFCKAGRLEDARRTFRRMMFLQFEPNDQTYLSMINGYVLAEKYFLVLMLWNEVKWKLSVDGQNGIKFDQNLVDAFLYAMVKGGFFDAVMQVVERASEMKIFVDKWRYKQAFMETHKKLKVAKLRKRNFKKKEALIAFKNWAGLNA 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g0453 648 Pfam Pentacotripeptide-repeat region of PRORP 353 435 IPR033443 -
Aed11g0453 648 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 494 528 IPR002885 -
Aed11g0453 648 PANTHER OS01G0788900 PROTEIN 1 648 - -
Aed11g0453 648 PANTHER BNAC05G43320D PROTEIN 1 648 - -
Aed11g0453 648 Gene3D Tetratricopeptide repeat domain 458 620 IPR011990 GO:0005515
Aed11g0453 648 Gene3D Tetratricopeptide repeat domain 345 457 IPR011990 GO:0005515
Aed11g0453 648 Gene3D Tetratricopeptide repeat domain 57 343 IPR011990 GO:0005515
Aed11g0453 648 Pfam PPR repeat family 498 540 IPR002885 -
Aed11g0453 648 Pfam PPR repeat 283 309 IPR002885 -
Aed11g0453 648 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 208 243 IPR002885 -
Aed11g0453 648 TIGRFAM PPR: pentatricopeptide repeat domain 498 529 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g0453 Aed-Chr11 3961599 3963545 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g0453 244 559 Miscellaneous Gene Families AT4G11690 24.615 2.67e-14 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g0453 - - gmx:100811600 1099.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g0453 11 3961599 3963545 Aed11g0453 11 3961599 3963545 ECH