Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g0429 ATGCTTGGAACAAGCAAATGGAATTTGAAGAATTTCTCACGGCTGCTGCAGTCCCCGTTACGTTTAGTTGACAGGGAAATTTCAGGAATAACTGATCCTATGCTTTACATTGGGATGCTGTTCAGTATGTTTGCATGGCATTTAGAAGACCATTATTTGTACAGCATAAATTATCATCACTCGGGTGCAAATAAAACTTGGTCTGGCGTGCCTGGCTATGCAGCATCACAATTTGAAAAGACTATCTTGCAGCATGTGTATTGCTGTAAGATCTTAACAAAACATGAAGAGGAGGGAGCTTTCAAGTTTCTTGCACAAAAAACAACCATGTTCCCACCAAGTGTCATGTTACAACATGATGTGGCAGTTTACAAGGCTGTACAGAAGCCAGGAGAGTATATCATCACCTTTCCAAGAGCATATCATACTGGATTTTGTCATGTTGGGGCTGCAGCTACCAGTCGTTATGCACATCTCAGAATGATGCCTTTAATTCCATATGAGGAACTTCTTTGTAAAGAGGCAATGTTGGTATAG 537 0.4078 MLGTSKWNLKNFSRLLQSPLRLVDREISGITDPMLYIGMLFSMFAWHLEDHYLYSINYHHSGANKTWSGVPGYAASQFEKTILQHVYCCKILTKHEEEGAFKFLAQKTTMFPPSVMLQHDVAVYKAVQKPGEYIITFPRAYHTGFCHVGAAATSRYAHLRMMPLIPYEELLCKEAMLV 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g0429 178 Gene3D Cupin 2 163 - -
Aed11g0429 178 PANTHER LYSINE-SPECIFIC DEMETHYLASE 2 178 - -
Aed11g0429 178 Pfam JmjC domain, hydroxylase 34 150 IPR003347 -
Aed11g0429 178 SMART cupin_9 1 172 IPR003347 -
Aed11g0429 178 SUPERFAMILY Clavaminate synthase-like 16 171 - -
Aed11g0429 178 PANTHER TRANSCRIPTION FACTOR JUMONJI FAMILY PROTEIN 2 178 - -
Aed11g0429 178 ProSiteProfiles JmjC domain profile. 1 176 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g0429 Aed-Chr11 3692266 3700952 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g0429 4 145 JUMONJI Transcription Factor Family AT2G34880 47.183 7.39e-40 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Aed11g0429 JmjC 1e-32 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g0429 - - gmx:100793144 321.627