Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g0419 ATGACATTGTACATGCCATTGTTCAGGTCATGTTCTACTTTAAGGTCCCTCACTCAACTCCACGCTCACCTCGTTGTCACTGGTCTCCACACCGACCCACTTGCCTCTACCAAGCTCCTCGAGTCCTACGCCCAAACGGGTTCTCTCCATTCATCAAAACTCGTTTTTGAAACCCACCCATCTCCCGATTCCTTCATGTTCGGTGTCCTCATCAAGTGTTACCTCTGGCACCACTTGTTTGATCAAGTGGTTTCCCTTTACCACCACCACATTCAAAAGGGTTCACACCTCACCCAAAACTGCACCTTCCTCTATCCTTCTGTTGTTAAAGCTGTTTCTTTTGTTCGGGACTTGGTTATGGGAAGGAAGGTGCATGGGAGGATTGTTAAAACTGGGCTTGACACTGATCATGTCATTGGCACTTCGTTGTTGGGAATGTATGGGGAATTGGGATGCTTGAGTGATGCTCGGAAGGTGTTTGATGAAATGCGTGTGAGAGATTTGGTTTCGTGGAGTTCGGTTATCGCGTGTTATGTGGAGAATGGGCGGCTGAGAGAAGGGTTGGAGATGTTGCGTTGGATGGTTTCTGAAGGAATTGGACCGGACTCAGTCACGATGCTCAGCGTAGCTGAGGCTTGTGGTAAAGTTGGTTGTTTGAGGGTGGTGAAATCGGTGCATGGATATGTGATAAGAAAAGAGATGGCAGGTGATGCGAGTTTGAGGAATTCTCTTATTGTTATGTACAGTCAGTGTGGTTACTTGTGTGGAGCAAAAGGGGTGTTTGAAAGTGTTGCTGATCGAAGTACTGCTTGTTGGACTTCTATGATTTCGTCATGTAATCAAAATGGGTGCTTTGAGGAGGCTATTGATGCTTTTATGCAGATGCAGGAATCAGAAGTGGAAGTCAATGCAATGACGATGATTAGTGTTCTCAGTTGCTGTGCTAGGTTAGGCTGGTTGAAAGAAGGAAAGTCTGTTCATTGCTTTATTTTAAGGAGAGAAATGGATGGTGCTGATCTTGATCTTGATCTTGGGCCTGCACTGACGGATTTCTATGCAGCATGTAGGAAAATAAGCAGTTGTGAAAAGCTTCTTCGTTTAATTGGAAACAGCAGTGTTGTATCATGGAACACACTCATATCAATTTATGCACAGGAGGGTTTAAACGAGGAGGCAATGGTGCTCTTTGCACGTATTTTTGAAAAGGGGCTAATGCCGGACTCATTTAGCTTAGCAAGTTCTATTTCAGCCAGTGCAGGTGCCGGTTCAATACGATTTGGACAGCAGATACACGGCCATGTCACCAAAAGAGGCTTCAGGGACGAATTTGTTCAGAACTCCTTGATGGATATGTATTCAAAATGCGGCTTTGTGAATTTGGCATACAAAATTTTTGACAAGATTAGGGAGAAAAGCATTGTGACATGGAACTGTATGATTTGTGGATTTTCACAAAATGGCATTTCAGTAGAAGCACTGAAGCTATTTGATGAGATGTACTTGAATTATCTGGACATTAATGAAGTGACCTTCTTAAGTGCAATTCAAGCTTGCTCCAATTCAGGCTATCTCGAGAAAGGAAAATGGATTCACCATAAGCTCATTGTATCCGGTGTGCAGAAGGATCTTTACATTGATACAACACTGGTTGACATGTATGCCAAGTGTGGAGACCTTAAAATGGCTCAAGGTGTTTTCGATAGCATGCCAGAGAAAAGTGTTGTATCATGGAGTGCTATGATTGCTGCATATGGCATACATGGTCAAATAACTGCTGCCACCACCCTCTTCACTAGAATGGTAGAGTCACATATCAAACCAAACGAAGTAACCTTCATGAACATCTTATCTGCCTGCAGGCACGCCGGATCGGTGCAGGAAGGGAAGTTCTATTTCAACTCAATGAGGGACTATGGCATAGTGCCTAATGCAGAACATTTTGCCTCTATAGTTGACCTTCTAAGCCGTGCCGGCGATATTGACGGAGCTTACAAGATAATTAAGTCAACGACATGTCAGCCTATAGATGCTAGCATATGGGGTGCTTTGCTTAATGGGTGTAGAATACATGAGAGGATGGACTTGGTTAAAAACATCCATAAAGAACTTAGAGAAATAAGAACAGATGATACAGGATACTACACTTTGTTATCTAACATATATGCTGAAGAAGGAAACTGGTATGAATCCAGAAAAGTGAGATCAAAGATGGAAGGAATGGGCCTGAAGAAGGTCCCTGGGTACAGTTCAATTGAGATAGATAAGAAAATTTACAGATTTGGAGCTGGAGATACTTCTTCTGAATGGCAATTGAATGAAATTTATAGGTTTTTGGATAATTTTCAAAGTTTGGCACAGGAACAAGGATGTAATGTAGAATGCTATGGTACAATTCAGGGCCAACAACGTATTGGAGAAAATATTTATAATTTTCTTAAATAA 2442 0.4238 MTLYMPLFRSCSTLRSLTQLHAHLVVTGLHTDPLASTKLLESYAQTGSLHSSKLVFETHPSPDSFMFGVLIKCYLWHHLFDQVVSLYHHHIQKGSHLTQNCTFLYPSVVKAVSFVRDLVMGRKVHGRIVKTGLDTDHVIGTSLLGMYGELGCLSDARKVFDEMRVRDLVSWSSVIACYVENGRLREGLEMLRWMVSEGIGPDSVTMLSVAEACGKVGCLRVVKSVHGYVIRKEMAGDASLRNSLIVMYSQCGYLCGAKGVFESVADRSTACWTSMISSCNQNGCFEEAIDAFMQMQESEVEVNAMTMISVLSCCARLGWLKEGKSVHCFILRREMDGADLDLDLGPALTDFYAACRKISSCEKLLRLIGNSSVVSWNTLISIYAQEGLNEEAMVLFARIFEKGLMPDSFSLASSISASAGAGSIRFGQQIHGHVTKRGFRDEFVQNSLMDMYSKCGFVNLAYKIFDKIREKSIVTWNCMICGFSQNGISVEALKLFDEMYLNYLDINEVTFLSAIQACSNSGYLEKGKWIHHKLIVSGVQKDLYIDTTLVDMYAKCGDLKMAQGVFDSMPEKSVVSWSAMIAAYGIHGQITAATTLFTRMVESHIKPNEVTFMNILSACRHAGSVQEGKFYFNSMRDYGIVPNAEHFASIVDLLSRAGDIDGAYKIIKSTTCQPIDASIWGALLNGCRIHERMDLVKNIHKELREIRTDDTGYYTLLSNIYAEEGNWYESRKVRSKMEGMGLKKVPGYSSIEIDKKIYRFGAGDTSSEWQLNEIYRFLDNFQSLAQEQGCNVECYGTIQGQQRIGENIYNFLK 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g0419 813 Pfam PPR repeat family 471 519 IPR002885 -
Aed11g0419 813 Pfam PPR repeat family 372 410 IPR002885 -
Aed11g0419 813 Pfam PPR repeat family 572 619 IPR002885 -
Aed11g0419 813 Gene3D Tetratricopeptide repeat domain 227 334 IPR011990 GO:0005515
Aed11g0419 813 Gene3D Tetratricopeptide repeat domain 625 798 IPR011990 GO:0005515
Aed11g0419 813 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 12 276 - -
Aed11g0419 813 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 573 607 IPR002885 -
Aed11g0419 813 Gene3D Tetratricopeptide repeat domain 429 501 IPR011990 GO:0005515
Aed11g0419 813 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 441 475 IPR002885 -
Aed11g0419 813 Pfam E motif 697 752 IPR046848 -
Aed11g0419 813 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 401 780 - -
Aed11g0419 813 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 260 406 - -
Aed11g0419 813 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 608 642 IPR002885 -
Aed11g0419 813 TIGRFAM PPR: pentatricopeptide repeat domain 169 202 IPR002885 -
Aed11g0419 813 TIGRFAM PPR: pentatricopeptide repeat domain 474 499 IPR002885 -
Aed11g0419 813 TIGRFAM PPR: pentatricopeptide repeat domain 374 407 IPR002885 -
Aed11g0419 813 TIGRFAM PPR: pentatricopeptide repeat domain 610 644 IPR002885 -
Aed11g0419 813 TIGRFAM PPR: pentatricopeptide repeat domain 141 168 IPR002885 -
Aed11g0419 813 TIGRFAM PPR: pentatricopeptide repeat domain 575 609 IPR002885 -
Aed11g0419 813 TIGRFAM PPR: pentatricopeptide repeat domain 271 303 IPR002885 -
Aed11g0419 813 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 260 406 - -
Aed11g0419 813 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 268 302 IPR002885 -
Aed11g0419 813 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 167 201 IPR002885 -
Aed11g0419 813 Pfam PPR repeat 169 199 IPR002885 -
Aed11g0419 813 Pfam PPR repeat 271 298 IPR002885 -
Aed11g0419 813 Pfam PPR repeat 141 166 IPR002885 -
Aed11g0419 813 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 401 780 - -
Aed11g0419 813 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 12 276 - -
Aed11g0419 813 Gene3D Tetratricopeptide repeat domain 335 428 IPR011990 GO:0005515
Aed11g0419 813 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 372 406 IPR002885 -
Aed11g0419 813 Gene3D Tetratricopeptide repeat domain 94 226 IPR011990 GO:0005515
Aed11g0419 813 Gene3D Tetratricopeptide repeat domain 519 624 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g0419 Aed-Chr11 3604121 3606710 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g0419 105 779 Glycoside Hydrolase AT3G49170 33.188 4.84e-115 367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g0419 - - gmx:100800182 1444.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g0419 11 3604121 3606710 Aed11g0419 11 3604121 3606710 ECH