Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g0389 ATGGGAAGGTCACCATGCTGTGAGAAGACAGGGCTAAAGAAAGGGCCATGGACGCCGGAGGAAGATCAAAAGCTCGTTGCTTTCATCGAAAAGCATGGCCATGGAAGCTGGCGCGCATTGCCTGCAAAAGCGGGGCTTAGAAGATGTGGAAAGAGTTGCAGACTTAGGTGGTCGAATTACCTCCGACCAGACATAAAACGAGGAAAGTTCAGCTTGCAGGAAGAGCAAACCATTATTCAACTTCATGCCCTTCTAGGAAACAGATGGTCAGCCATAGCATCTCACTTATCAAAGAGAACCGACAATGAAATCAAGAACTATTGGAACACCCACCTCAAGAAGAGGCTCGAGAAAATGGGCATAGACCCCACCACTCACAAGCCAAAGATCGAGTCCCTTGTCGACTCCAAAGATGGCTCCAGCAACCTCGGCCACATGGCTCAGTGGGAGAGCGCTCGGCTCGAAGCCGAAGCCAGATCCAAAATCCAAGAACAACAACAACAACAACAACAAAACAACCACCTCGGATCAACACAAATTTCTAGGCTCGTTCTCAACAAAATCACACCCCAACAACAACATCAACAACTCTCACTACCACCGTGTCTCGACGTGATCAAAGCATGGCAAAGTTCATGGTCAAACTCAAACAACAACAACTCATCACTAAACGACAAGAAGAAATCCATGCATGTGCATAGCATGTATGCAATGATGCTTTCCACTGATGACCTTGAATCTCCAACATCCACGCTGTGCTTCCCCGAGAGTAGTGTGCAAATAAATAACAATAATAATCATAGTAACAATAACTCTAACGCTATGGTTTCAACCAACCACGTTGGGTTAATCAATGAGAACTATTTACTCCCTCCAACCACCGTGGATGAGTTTATTACCAAAAGTGAAATCACAAATGGTGGTGGTGGTTACAACGAGTCGTGGAAGTACTTGACCAACCACAACACTGAAGAAGATGAAGAACTCATTGAAACTGATCATGGGAAGAGAATTATGTACGACACGATGCCATGCTTTCAAGACGATGATCATGATGATGAAATTATGGTGGCTGTTGAGGCATTACGTGGTGCGGGTTATTATGCTAATAATAATAATAATCATATGATAGGTTTCGACAATGATTTTGATTCCAACGAGGATTTAGCGGCGGAGAACTTGGAAGTGAACTTCGAGGAGAATAAGGATTGCTGGAATGGCATGCTTAGTTATAAGTGA 1239 0.4431 MGRSPCCEKTGLKKGPWTPEEDQKLVAFIEKHGHGSWRALPAKAGLRRCGKSCRLRWSNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIASHLSKRTDNEIKNYWNTHLKKRLEKMGIDPTTHKPKIESLVDSKDGSSNLGHMAQWESARLEAEARSKIQEQQQQQQQNNHLGSTQISRLVLNKITPQQQHQQLSLPPCLDVIKAWQSSWSNSNNNNSSLNDKKKSMHVHSMYAMMLSTDDLESPTSTLCFPESSVQINNNNNHSNNNSNAMVSTNHVGLINENYLLPPTTVDEFITKSEITNGGGGYNESWKYLTNHNTEEDEELIETDHGKRIMYDTMPCFQDDDHDDEIMVAVEALRGAGYYANNNNNHMIGFDNDFDSNEDLAAENLEVNFEENKDCWNGMLSYK 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g0389 412 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Aed11g0389 412 CDD SANT 69 112 IPR001005 -
Aed11g0389 412 CDD SANT 16 61 IPR001005 -
Aed11g0389 412 Gene3D - 13 66 - -
Aed11g0389 412 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Aed11g0389 412 MobiDBLite consensus disorder prediction 154 174 - -
Aed11g0389 412 SMART sant 66 114 IPR001005 -
Aed11g0389 412 SMART sant 13 63 IPR001005 -
Aed11g0389 412 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Aed11g0389 412 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Aed11g0389 412 Coils Coil 151 171 - -
Aed11g0389 412 PANTHER MYB TRANSCRIPTION FACTOR MIXTA-LIKE PROTEIN 1 372 - -
Aed11g0389 412 Gene3D - 68 138 - -
Aed11g0389 412 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Aed11g0389 412 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 372 - -
Aed11g0389 412 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Aed11g0389 412 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g0389 Aed-Chr11 3320769 3322469 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g0389 1 256 MYB Transcription Factor Family AT3G01140 60.456 1.71e-97 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aed11g0389 Myb_DNA-binding 4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g0389 K09422 - gmx:100792994 595.119