Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g0388 ATGGGAAGGTCACCATGCTGTGAGAAGAAGATGGGGCTAAAGAAAGGACCATGGACACCCGAGGAAGACCAAAAGCTCATTGCTTGCGTCGAAAAGCATGGCAATGGAAGCTGGCGTGCAATGCCAGCAAAAGCTGGGCTTAGAAGATGTGGAAAAAGTTGCAGACTGAGATGGATTAACTACCTCAGGCCTGATATAATACGAGGAAATTTCAGCTTGAAGGAAGAGCAAACCATTATTCAACTTCATGCTCTTCTTGGAAACAGATGGTCAACTATAGCATCTCACTTGCCCAAGAGAACCGACAATGAAATCAAGAACTATTGGAACACCAAGCTGAAGAAAAAGTTCGACAAAATGGGCATAGACCCCACCACTCACAAGCCGAAGATCGAGTCGTCCCTAGTCGACTCCAAAGACGGCTCCAGCAACCTCGGCCACATGGCTCAGTGGGAGAGCGCTCGGCTCGAAGCCGAAGCCAGACTCGTGAGAGAATCCAAACTCCAACAACAACAAACCTGCAGGCTCGTTCTAAAAAAGATCACTACCCAACAACAACAACCATCAAGTACTTCATGGTCAAACAACAACAACAACAACAAAAACTCATCACTTACAACAACAACAAACGAAGAGAACAAAACCATGCATGTGCATAGCATGTATGCCATGATGCTTGCCACTGATCATGACGACCTCGACTCTTCAGCTTCCACGTTGTGCTTCCCCGAGAGCATGCAAATCAACAACAACAACAACAACAACGCTAACGTTGGGTTGATCGATGAAAACTATTTACTTCCTCCAACTACCACTGTTACTGTGGATGAGTTTATTATCACAGGAACAAGTAGTAGCGAGGGTGCAAGTGCAAGTGCAACTGTGAATGGTGGTGATAACGATTCGTGGAGGTACTTGATTACCAAACACAACACTGAAGAATTAGAAAAAGAAGATGAAGAACTCGTTGAAACTGATCATGAGAAGAGAATTATGTACGACACGATGTCATCATGCTTGCAAAACGACGATGATGACATTATGGTGGTTGTTGAGGAGGCATCAAGATCAAGAGGTGCGGCTTATGGTGGTGGTGGTAATAGTAATATGGTAGGTTTCAATAACGATTTTGATTCCTACCAAGATTTTGTGCCGGAAAATTTGGAAGTGGGCTTCGAGGAGAATAAGGATTGCTGGAATGGCATGCTTAGTTATAACTTATTAGTGAACAATATTGCCAGCTAG 1245 0.4418 MGRSPCCEKKMGLKKGPWTPEEDQKLIACVEKHGNGSWRAMPAKAGLRRCGKSCRLRWINYLRPDIIRGNFSLKEEQTIIQLHALLGNRWSTIASHLPKRTDNEIKNYWNTKLKKKFDKMGIDPTTHKPKIESSLVDSKDGSSNLGHMAQWESARLEAEARLVRESKLQQQQTCRLVLKKITTQQQQPSSTSWSNNNNNNKNSSLTTTTNEENKTMHVHSMYAMMLATDHDDLDSSASTLCFPESMQINNNNNNNANVGLIDENYLLPPTTTVTVDEFIITGTSSSEGASASATVNGGDNDSWRYLITKHNTEELEKEDEELVETDHEKRIMYDTMSSCLQNDDDDIMVVVEEASRSRGAAYGGGGNSNMVGFNNDFDSYQDFVPENLEVGFEENKDCWNGMLSYNLLVNNIAS 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g0388 414 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 403 - -
Aed11g0388 414 Gene3D - 70 116 - -
Aed11g0388 414 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 117 IPR017930 -
Aed11g0388 414 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Aed11g0388 414 PANTHER TRANSCRIPTION FACTOR MYB106 1 403 - -
Aed11g0388 414 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Aed11g0388 414 MobiDBLite consensus disorder prediction 120 144 - -
Aed11g0388 414 MobiDBLite consensus disorder prediction 185 210 - -
Aed11g0388 414 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 66 IPR017930 -
Aed11g0388 414 MobiDBLite consensus disorder prediction 120 135 - -
Aed11g0388 414 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Aed11g0388 414 CDD SANT 70 113 IPR001005 -
Aed11g0388 414 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Aed11g0388 414 Pfam Myb-like DNA-binding domain 68 111 IPR001005 -
Aed11g0388 414 CDD SANT 17 62 IPR001005 -
Aed11g0388 414 Gene3D - 8 67 - -
Aed11g0388 414 SMART sant 14 64 IPR001005 -
Aed11g0388 414 SMART sant 67 115 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g0388 Aed-Chr11 3311087 3313823 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g0388 1 216 MYB Transcription Factor Family AT3G01140 64.035 5.03e-93 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aed11g0388 Myb_DNA-binding 3.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g0388 K09422 - gmx:100792994 470.314