Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g0387 ATGGGAAAGATGCTATGCTGTGAGAAGGTAAGGTTGAAGAAAGGACCATGGACACCTGAAGAAGATTCCAAGCTCGTTGCTTTTGTTGAAAAGCACGGCCATGGAAACTGGCGTCTTGAAAGATGTGGAAAGAGTTGCAGACTGAGATGGATTAACTACCTGAAGCCTGATATTAAACGAGGAAACTTCAGCATGGAGGAAGACCACACCATTATTCAACTTCATGCTCTTCTTGGAAACAAATGGTCAATCATAGCAGCTCATTTGCCCAAGAGAACAGACAATGAGATCAAGAACTACTGGAACACCAACGTCAAGAAAAGACTCATCAGAATGGGGTTAGATCCCATCACTCACAAACCAACAAAATCAAACACGTTTGAACCCTATGATGATGTGTCCAAGAACACTATCAACATGGGGCACGTGGCTCAATGGGAGAGTGCTAGACTCGAAGCTGAATCAAGAGGGTCTATGTTGCAACTTGGGTCTACAGGCTCCTCTAGGTTAATCTTAAGCAAAATCCCAACTCATCATCATCATCAACCTTGTCCCAATTCATCATCATCAGATCAGTCACTATTATCAACCGTACAGAACAAGACAGTATACAACATGTATGCCCTAGTGCTTGCGACGAATCATGATCACCACCACCTTCCATCGTCGGTAAGCGTTCTTCCCAAGCTTCCTCATGAAGAAGTTTCTACCAACATTAATGGACAATTCACAAACACGGATAAAGACAACGACGATGGCAATGTCATAGAAACTGGTAGTCAGGTTCAAAAGGTAACAGATGGTTGTGTGTCAAACTTGCAAGACGAGGACATTATGATGGCTCTGGAAGCGTTTAGAACATCAAAATGTGAAAGTATTGAGGAGCTGTTTAATGAATCCGTTGCCAGAGGTCTAATATAA 921 0.4267 MGKMLCCEKVRLKKGPWTPEEDSKLVAFVEKHGHGNWRLERCGKSCRLRWINYLKPDIKRGNFSMEEDHTIIQLHALLGNKWSIIAAHLPKRTDNEIKNYWNTNVKKRLIRMGLDPITHKPTKSNTFEPYDDVSKNTINMGHVAQWESARLEAESRGSMLQLGSTGSSRLILSKIPTHHHHQPCPNSSSSDQSLLSTVQNKTVYNMYALVLATNHDHHHLPSSVSVLPKLPHEEVSTNINGQFTNTDKDNDDGNVIETGSQVQKVTDGCVSNLQDEDIMMALEAFRTSKCESIEELFNESVARGLI 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g0387 306 SUPERFAMILY Homeodomain-like 11 101 IPR009057 -
Aed11g0387 306 PANTHER TRANSCRIPTION FACTOR MYB106 1 236 - -
Aed11g0387 306 CDD SANT 16 54 IPR001005 -
Aed11g0387 306 Pfam Myb-like DNA-binding domain 60 103 IPR001005 -
Aed11g0387 306 Pfam Myb-like DNA-binding domain 14 54 IPR001005 -
Aed11g0387 306 ProSiteProfiles Myb-like domain profile. 55 105 IPR001005 -
Aed11g0387 306 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 54 IPR017930 -
Aed11g0387 306 ProSiteProfiles Myb-like domain profile. 9 54 IPR001005 -
Aed11g0387 306 Gene3D - 62 109 - -
Aed11g0387 306 Gene3D - 13 59 - -
Aed11g0387 306 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 55 109 IPR017930 -
Aed11g0387 306 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 236 - -
Aed11g0387 306 SMART sant 13 56 IPR001005 -
Aed11g0387 306 SMART sant 59 107 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g0387 Aed-Chr11 3273414 3274748 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g0387 1 156 MYB Transcription Factor Family AT3G01140 66.871 3.13e-78 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aed11g0387 Myb_DNA-binding 1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g0387 K09422 - gmx:100790887 416.001