Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g0386 ATGGGAAGGATTCCGTGCTGCGATGAGAAGGTAGGGTTGAAGAAAGGACCATGGACACCCGAAGAAGATTCCAAGCTCGTTGCTTATGTTGAAAAGCACGGCCATGGAAACTGGCGTTCTGTGCCTGCCAAAGCAGTGGGTTTGGGGAATTTTTGCCGAATCGCTAATTTTGTTTACAGTAGTGAAATGTTTTTCTGCTTCTAA 204 0.4608 MGRIPCCDEKVGLKKGPWTPEEDSKLVAYVEKHGHGNWRSVPAKAVGLGNFCRIANFVYSSEMFFCF 67
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g0386 67 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 47 IPR017930 -
Aed11g0386 67 ProSiteProfiles Myb-like domain profile. 10 41 IPR001005 -
Aed11g0386 67 CDD SANT 17 47 IPR001005 -
Aed11g0386 67 Gene3D - 12 58 - -
Aed11g0386 67 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 45 - -
Aed11g0386 67 Pfam Myb-like DNA-binding domain 15 47 IPR001005 -
Aed11g0386 67 PANTHER TRANSCRIPTION FACTOR MYB106 1 45 - -
Aed11g0386 67 SUPERFAMILY Homeodomain-like 12 44 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g0386 Aed-Chr11 3267404 3270248 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g0386 1 54 MYB Transcription Factor Family AT5G15310 70.175 1.98e-23 87.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Aed11g0386 Myb_DNA-binding 4.2e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g0386 K09422 - gmx:100785734 90.8929