Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g0377 ATGGGTCAAATTTGTTTGCTCTTGGTGGGGCTTCTTCTCTCAATGTTCTCCTCTGCCTATGGCTTTGGATATGGTGGTGGCTGGGTTAATGCACATGCCACCTTCTATGGAGGGAGTGATGCCTCAGGAACAATGGGTGGGGCATGTGGATATGGGAACCTCTACAGCCAAGGGTATGGAACCAACACTGCTGCTTTGAGCACTGCTTTGTTCAACAATGGACTAAGCTGTGGCTCATGCTATGAGATAAGGTGTGTGAATGACCATAGATGGTGCCTACCTGGCTCCATTTTGGTCACTGCCACCAATTTCTGTCCTCCAAACAATGCCTTACCAAACAATGCAGGAGGGTGGTGCAACCCTCCTATGCACCACTTTGACCTCTCTCAGCCTGTTTTTCTTCGCATTGCACAATACAGAGCTGGAATTGTGCCTGTGTCCTACAAAAGGGTACCCTGCAGGAGAAGGGGTGGCATAAGATTCACAATCAATGGCCACTCATACTTCAACTTGGTCCTAATAACAAACGTAGGAGGTGCTGGAGATGTTCATGCTGTGGCCATCAAAGGTTCAAGAAGTGGTTGGATGCCAATGTCCAGAAACTGGGGTCAAAACTGGCAAAGCAACAACTATCTCAATGGCCAAAGCCTCTCTTTTAAGGTCACCACAAGTGATGGCCAAACTGTTGTGTCCTACAATGCTGCCCCTGCTGGTTGGTCCTTTGGCCAAACATACACTGGTGCTCAATTCCACTAG 756 0.4841 MGQICLLLVGLLLSMFSSAYGFGYGGGWVNAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIRCVNDHRWCLPGSILVTATNFCPPNNALPNNAGGWCNPPMHHFDLSQPVFLRIAQYRAGIVPVSYKRVPCRRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVAIKGSRSGWMPMSRNWGQNWQSNNYLNGQSLSFKVTTSDGQTVVSYNAAPAGWSFGQTYTGAQFH 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g0377 251 SUPERFAMILY Barwin-like endoglucanases 27 176 IPR036908 -
Aed11g0377 251 Pfam Expansin C-terminal domain 159 236 IPR007117 -
Aed11g0377 251 Gene3D - 158 251 IPR036749 -
Aed11g0377 251 Gene3D - 17 154 IPR036908 -
Aed11g0377 251 PANTHER EXPANSIN-A10 11 250 - -
Aed11g0377 251 Pfam Lytic transglycolase 63 148 IPR009009 -
Aed11g0377 251 PANTHER EXPANSIN-A15 11 250 IPR002963 GO:0009664
Aed11g0377 251 PRINTS Expansin/Lol pI family signature 233 247 IPR007118 GO:0005576
Aed11g0377 251 PRINTS Expansin/Lol pI family signature 45 63 IPR007118 GO:0005576
Aed11g0377 251 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Aed11g0377 251 PRINTS Expansin/Lol pI family signature 195 209 IPR007118 GO:0005576
Aed11g0377 251 PRINTS Expansin/Lol pI family signature 141 157 IPR007118 GO:0005576
Aed11g0377 251 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Aed11g0377 251 SMART dpbb_1 63 148 IPR007112 -
Aed11g0377 251 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 158 IPR007112 -
Aed11g0377 251 SUPERFAMILY PHL pollen allergen 155 247 IPR036749 -
Aed11g0377 251 PRINTS Expansin signature 157 169 IPR002963 GO:0009664
Aed11g0377 251 PRINTS Expansin signature 85 96 IPR002963 GO:0009664
Aed11g0377 251 PRINTS Expansin signature 133 146 IPR002963 GO:0009664
Aed11g0377 251 PRINTS Expansin signature 204 225 IPR002963 GO:0009664
Aed11g0377 251 PRINTS Expansin signature 97 107 IPR002963 GO:0009664
Aed11g0377 251 PRINTS Expansin signature 169 190 IPR002963 GO:0009664
Aed11g0377 251 PRINTS Expansin signature 116 133 IPR002963 GO:0009664
Aed11g0377 251 PRINTS Expansin signature 58 72 IPR002963 GO:0009664
Aed11g0377 251 PRINTS Expansin signature 233 249 IPR002963 GO:0009664
Aed11g0377 251 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 168 247 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g0377 Aed-Chr11 3196980 3199480 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g0377 1 251 Expansin Gene Family AT2G03090 79.681 1.21e-149 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g0377 - - gmx:100796316 499.204
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g0377 11 3196980 3199480 Aed11g0377 11 3196980 3199480 ECH
Aed11g0377 11 3196980 3199480 Aed6g1585 6 19861531 19863648 ECH
Aed11g0377 11 3196980 3199480 Aed3g0376 3 2674870 2676765 ECH