Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g0376 ATGAAGAAAGCTAATGAGTTATCTATACTTTGTGATATTGAAATTATACTTCTCATATTCTCACCTAGTGGAAAGCCTTCACTATGCAAAGGAAAATGCAATAACTTTGAGGAAATCATCACAAAATTTGTTCAACTAACTCCACAGGAAAGGGTATTGAAGAAAACATTTAAAAAGTTAGATCATAATGTGAATATACAAGATTTTTTTAGTACAAGCTATTGGACTCATCTTGATAAAATCAATAGTGTCGAACAACTGGGACAAATGGAGAATTCACTTAAGGAACCACTTAATCAAATTAGAAACATAGAGGGTTCAACAAGCTATTCTTTTGGGAGTTATGCCAATTACCTTGACTCAAGCACCAAAACAGATATTTCAATTTCTAAGCAAGAAAATGGTGTCTTTGGTGACTTGAGAAGTACCTCTCCAATGAGTCTACAACTTCCATATCTTCCAAACAATTTCAATCTATTGAATGATATGAAGGCCCAACTAACTCCAGAGATGAAACCAAGTGATGAAAACCATGTCGATTAA 543 0.3333 MKKANELSILCDIEIILLIFSPSGKPSLCKGKCNNFEEIITKFVQLTPQERVLKKTFKKLDHNVNIQDFFSTSYWTHLDKINSVEQLGQMENSLKEPLNQIRNIEGSTSYSFGSYANYLDSSTKTDISISKQENGVFGDLRSTSPMSLQLPYLPNNFNLLNDMKAQLTPEMKPSDENHVD 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g0376 180 PANTHER MADS BOX PROTEIN 109 173 - -
Aed11g0376 180 Gene3D - 1 67 IPR036879 GO:0003677|GO:0046983
Aed11g0376 180 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL30 1 52 - -
Aed11g0376 180 PANTHER MADS BOX PROTEIN 1 52 - -
Aed11g0376 180 SUPERFAMILY SRF-like 1 54 IPR036879 GO:0003677|GO:0046983
Aed11g0376 180 ProSiteProfiles MADS-box domain profile. 1 25 IPR002100 GO:0003677|GO:0046983
Aed11g0376 180 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL30 109 173 - -
Aed11g0376 180 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 1 26 IPR002100 GO:0003677|GO:0046983
Aed11g0376 180 CDD MADS 1 26 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g0376 Aed-Chr11 3189880 3195642 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g0376 1 102 Type I MADS-box Gene Family AT2G03060 46.715 1.11e-34 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Aed11g0376 SRF-TF 1.8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g0376 - - mnt:21398756 154.066