LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed11g0374	ATGCCGATAATAAAACTCTTCCCACACTCCCTCCCAAAACCCTTCCAAAACCCAACAACAACAACCTCGGACCGCGGCCTCGTATTCCGCGAAAAGGTGCAGTACCTTAAAGCCCTCAAAGTGAACCCTGACAAGGCCTTCCGCTTGAACCCCACCCTCCGCTCCTCCCCTCTCTCAACCCTAAAATCCGTTACGCGCTGCCTCTCGTCGCTGGGCATTCCACGCGCCGACATGGGGCGCATCCTCGACATGCTCCCCGTGCTCCTCACGTGCGACCCCTATTTCCAATTCTACCCTCTCCTCGACTTCCTCCTCCACGAGGTCCCAATCCCCTACCCCGACGTCCACCTCTGCATCCTGCGCTGCCCCAGATTGCTCGCTTCCAGCGTCGACCACCGATTGCGACCCACATTGCGTTTTCTGGAAGAATTAGGGTTCAGTGGGGCCCACTCGCTCACGTGCCAGACGACCCTTCTTCTCGTGTCCAGCGTGGAGGACACCCTTTTGCCCAAGATTGAGTTTTTGAAGGGTTTGGGGTTCACCCGCGAGGAGGTGGCTAACATGGTCGTGAGGTCCCCTGGCTTGTTGACTTTTAGCGTTGACGGGAATTTGGGGCCAAAGGTGGAGTTTTTCTTGGAGGAGATGAATGGGGATGTTGCTGAGCTCAAGAGGTTTCCGCAGTACTTCTCTTTTAGCTTGGAGCGGAGGATTAAGCCGAGGTATAGGATGCTGAGGCGGCTCGGTGTGGCAGTGGCAATGATGATGCCGTTGGAAGACATGTTGAAGGTTAGTGATGGCGGGTTTAATGCTAGCTTGCTTGAATTGGGGTTTAGGACGCTTGAGGTTAGACAACAGTTGTAG	861	0.5517	MPIIKLFPHSLPKPFQNPTTTTSDRGLVFREKVQYLKALKVNPDKAFRLNPTLRSSPLSTLKSVTRCLSSLGIPRADMGRILDMLPVLLTCDPYFQFYPLLDFLLHEVPIPYPDVHLCILRCPRLLASSVDHRLRPTLRFLEELGFSGAHSLTCQTTLLLVSSVEDTLLPKIEFLKGLGFTREEVANMVVRSPGLLTFSVDGNLGPKVEFFLEEMNGDVAELKRFPQYFSFSLERRIKPRYRMLRRLGVAVAMMMPLEDMLKVSDGGFNASLLELGFRTLEVRQQL	286

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed11g0374	286	PANTHER	TRANSCRIPTION TERMINATION FACTOR MTEF1, CHLOROPLASTIC	17	281	-	-
	Aed11g0374	286	Pfam	mTERF	46	268	IPR003690	GO:0003690\|GO:0006355
	Aed11g0374	286	PANTHER	CGI-12 PROTEIN-RELATED	17	281	IPR003690	GO:0003690\|GO:0006355
	Aed11g0374	286	Gene3D	Transcription termination factor 3, mitochondrial	31	277	IPR038538	-
	Aed11g0374	286	SMART	mt_12	150	181	IPR003690	GO:0003690\|GO:0006355
	Aed11g0374	286	SMART	mt_12	44	74	IPR003690	GO:0003690\|GO:0006355
	Aed11g0374	286	SMART	mt_12	79	111	IPR003690	GO:0003690\|GO:0006355
	Aed11g0374	286	SMART	mt_12	219	250	IPR003690	GO:0003690\|GO:0006355
	Aed11g0374	286	SMART	mt_12	116	147	IPR003690	GO:0003690\|GO:0006355
	Aed11g0374	286	SMART	mt_12	186	218	IPR003690	GO:0003690\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed11g0374	Aed-Chr11	3184330	3185190	Dispersed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	mTERF	Aed11g0374		mTERF	8.9e-35	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed11g0374	K15032		-	gmx:100785219	448.743