Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g0373 ATGGTAACAGTTGCAGACCCAACATCATTTGTGACACAAAATCTACGAAATGAAGTAATGGGCAGTAGCAAGTGTTGCATGATCTCTTCACAACAGAACCAGAATGCCCCCACATGTTGTTACCCTTCTCCTCCTCCTCCAATGGGAATAATGGCCTATGCAGACATGATGGGGTCTCTCTCACTTTCAAACAACGCTTCTTCATCTCAAGAAAGTAATGGTTATGGCTATGGTACTAGCTGGAGTACTTTTCCCTTCATGAGGGAGTTTCTTTCTTCTTCAAACTTTGAAGATCACTGCAGTAATAACAACAGTGATGAGAAAGGCAAGTTCAGTGAAGAAGATAGTAACCCTAATGAAAACCTTGCCAGTGGCAAAGAGGTGGATAGTAGTAGTGGGCACTCCAAACTTTGTGCTAGAGGGCATTGGAGACCTGCTGAAGATTCCAAGCTCAAGGAGCTTGTTGCTCTTTATGGCCCTCAGAATTGGAACCTCATTGCTGAAAAACTAGAAGGAAGATCAGGGAAGAGTTGTAGGTTGAGGTGGTTCAACCAGTTGGATCCAAGGATCAACAGAAGGGCATTCAGTGAAGAGGAAGAAGAGAGGCTAATGCAGGCACATAGAATTTATGGGAACAAATGGGCCATGATTGCAAGGCTTTTCCCTGGGAGAACAGATAATGCAGTGAAGAATCACTGGCATGTTATAATGGCAAGGAAGTACAGGGAACAATCCAGTGCTTACAGGAGGAGGAGAATGACCCAATCTGTGTACAGAAGAGTGGATCAAAATCCAACCTTTGTTTGCAGCACCACCAGAGATAATAATATTGCATCCTCAACCACAGAACCAGAACAACCATCACCTTCTTCCTATTACCACCATGGAGTAGCACTCACCAATAACATGGCTAGTTTCCTATCCTTCCATGGTAGTGTTGTTGAGTTTGGCTCAAATGGTTCTCCACAAGCACCACTTGATTTCTTCCCTGGTGCTGGTGGAAGAAGCAATATGAGCCAGATCAGAAGAATGGAAAGGACCAATACCAATGAATCTCATCACAACCATCATTGCCAATTATCTGGTTTCTACCCTCATTATCCCCAACAATATTTGATGGCAATGCAACCTGAAGACGACGACAACAACAGCAACAACAATTTTTACAGTTTCTTGAATTCCTCATCCAGGAGGGAACCATCATCATCATCATCACCATGTGTTGCAGGAATCAATATCAGAGATAAAGTGGTGAATAGTGACCCCTCCCCAGATGGTGTTGTTGTTGTTCCACCCCCATTTTTTGACTTCCTTGGAGTAGGAGCCACATGA 1332 0.4369 MVTVADPTSFVTQNLRNEVMGSSKCCMISSQQNQNAPTCCYPSPPPPMGIMAYADMMGSLSLSNNASSSQESNGYGYGTSWSTFPFMREFLSSSNFEDHCSNNNSDEKGKFSEEDSNPNENLASGKEVDSSSGHSKLCARGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINRRAFSEEEEERLMQAHRIYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAYRRRRMTQSVYRRVDQNPTFVCSTTRDNNIASSTTEPEQPSPSSYYHHGVALTNNMASFLSFHGSVVEFGSNGSPQAPLDFFPGAGGRSNMSQIRRMERTNTNESHHNHHCQLSGFYPHYPQQYLMAMQPEDDDNNSNNNFYSFLNSSSRREPSSSSSPCVAGINIRDKVVNSDPSPDGVVVVPPPFFDFLGVGAT 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g0373 443 MobiDBLite consensus disorder prediction 101 115 - -
Aed11g0373 443 MobiDBLite consensus disorder prediction 269 290 - -
Aed11g0373 443 Gene3D - 193 263 - -
Aed11g0373 443 Gene3D - 140 191 - -
Aed11g0373 443 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 187 241 IPR017930 -
Aed11g0373 443 MobiDBLite consensus disorder prediction 377 407 - -
Aed11g0373 443 PANTHER MYB PROTEIN-RELATED 51 317 - -
Aed11g0373 443 CDD SANT 143 184 IPR001005 -
Aed11g0373 443 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 140 186 IPR017930 -
Aed11g0373 443 PANTHER MYB TRANSCRIPTION FACTOR 51 317 - -
Aed11g0373 443 PANTHER MYB TRANSCRIPTION FACTOR 321 443 - -
Aed11g0373 443 CDD SANT 194 234 IPR001005 -
Aed11g0373 443 ProSiteProfiles Myb-like domain profile. 187 237 IPR001005 -
Aed11g0373 443 MobiDBLite consensus disorder prediction 116 131 - -
Aed11g0373 443 PANTHER MYB PROTEIN-RELATED 321 443 - -
Aed11g0373 443 MobiDBLite consensus disorder prediction 101 139 - -
Aed11g0373 443 Pfam Myb-like DNA-binding domain 192 235 IPR001005 -
Aed11g0373 443 Pfam Myb-like DNA-binding domain 140 186 IPR001005 -
Aed11g0373 443 ProSiteProfiles Myb-like domain profile. 140 186 IPR001005 -
Aed11g0373 443 SUPERFAMILY Homeodomain-like 140 233 IPR009057 -
Aed11g0373 443 SMART sant 191 239 IPR001005 -
Aed11g0373 443 SMART sant 139 188 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g0373 Aed-Chr11 3162435 3164911 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g0373 113 265 MYB Transcription Factor Family AT1G69560 74.375 1.40e-78 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aed11g0373 Myb_DNA-binding 2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g0373 K09422 - gmx:100776292 548.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g0373 11 3162435 3164911 Aed11g0373 11 3162435 3164911 ECH