Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g0359 ATGTTGAATGTTGATGTGATTGGGAATAAAAAGAGGAAGAGGTGTGGGAGGGTTTTCAGGTTCAAGAACTTTGGTGAACCTGGTTACCCTGTTATGTTTAGTGGGCCATTTCGTGAGAATGTGAGTGCATTGCTTGAGTATGCGAATTTGGAGAGTGATTTAGGCATGGAAATGCCAATGTGGTCTTTTCAACTTGAAGTTCATCACCACCCTCCTTTGCATGTCTTGTTGTTTGTGATTGAAGAGCCAATAGAGGCAGCTGCGATGAATCGTCATTGCAAGCATTGTCAATACATTGGTTGGGGCAAGCATTTGATTTGCAACAAGAAGTATCACTTCGTGTTACCCTCAAAGGAGGCACTGGGTAGCTGCAGGAGCTGTGAAGGGTGTTGTGATGCTGCTGCAATTGCTACAATTATTAATAATAATAATAATGGTAAGTCCAAATTAATTAAATTACAGGGTCATATGATGCATGGTGTTTTTCACTCTAATGGATTCGGGCATTTGCTATGTGTCAACGGATTGGAAATGGGTTCGAATTTGGCTGGGAACCAGATCATGGACTTTTGGAACCGTTTGTGCAACGGATTGCAAGCAAGGAAGGTGAGTTTGCATGACATTTCACAAAAGAGTGGGATGGATTTGAGACTTGTTAATGGAATAGCATACAATGAACCATGGTTTGGTCGTTGGGGTTACAAATTTGGTCGAGGGTGCTTTGGTGTAACTCAATCAATGTACAATAAAGCCATACAAGCAATAAGAAGCATGCCACTATACTTGATCATACACCACATTGGCAATTCCAACCATGGCATTGCACTCATCTTTTCAAGGTACCAAACACTTTCGGATCAATCCTTAGTGACCCTTGGTGACCTATTTTGCTACATGCTAGATCTAAAATCACGTCTTCCACGTGAAACATGCATTAGTTCCTATAGCACAAGTGCATTGGTTGAAACCAATTGTCGTTGGTCCCCTAAAAGGATTGAGATGGCAACGAAGGTCATTGTCGAGGCCTTAAAAAAAACTGAGTTTAGATGGGTTTCGAGACAAGAAGTTAGAGACGCTGCACGCGTGTACATTGGTGACACCGGTTTGCTTGATTTTGTGTTAAAGTCGCTAGGAAACCACGTTGTTGGAAACTACTTGGTTTGTCGAAGTTTGAATCCCGTGACCAAAGTGTTGGAATATTGCTTAGAAGACATTTCTATTTCTAATGTGTATCCTTGTAACGAAGGTATGGTTCTTGTGAATAACAAAGTGAAGGACAAGTACAAAATCACAAGGACTCAACTAATGAAGGACATGCTTTATTTGTATAAGTATATTCTTATAGGTCCAAAACCGATTATGGGGTCAGAATTTCATTCAGCTGTACCATTGGCAGCTAGGATAATTCTTGATACCAAGTATTTCATAAAAGATTACTTTGGAGATGTTCCTTTTCCTTATCAAGTTGATCAATTAGGTTGTTCAGATGAAAAACTCAACATTTATTGTACAATTTTGTTGAGGAACAACAAGCCCATTATGCAACCCTATGAATGCATCACATTGAAAAGAAGTGCTACAATCAATGACTTGAAGCTAGAAGTTGAAAGGAATTTTAGAGAAATCTACTGGGGATTAAGGAGTTTTGTAGTGGAATCAATTGGGAATTTAAGTGCCAATGATTATGGGAAAGAAATGGTTTTTGACCTAATTGAAGTGGGTGGAAAAGTTGCACTTGAGGGCTTGTTTGGTGGTGACATGATGAGAATAGACATAAACATGATTGAACAAATAAGTGAAAGTGACCCAAATAGTGGTGTGGTGGATTGCACTTGTGGAACTATTGAAGATGATGGTGAAAGAATGGTCTCGTGTGATATTTGTGAAATTTTGCAACATACTAGATGTGTTCGAATTCCAAATGATGAAGAGGTTCCTCATATTTTTCTATGCAAAAAGTGTGAGCTAGAAATTGTTTTGTTTCCATCGTTGCCATAG 1998 0.3919 MLNVDVIGNKKRKRCGRVFRFKNFGEPGYPVMFSGPFRENVSALLEYANLESDLGMEMPMWSFQLEVHHHPPLHVLLFVIEEPIEAAAMNRHCKHCQYIGWGKHLICNKKYHFVLPSKEALGSCRSCEGCCDAAAIATIINNNNNGKSKLIKLQGHMMHGVFHSNGFGHLLCVNGLEMGSNLAGNQIMDFWNRLCNGLQARKVSLHDISQKSGMDLRLVNGIAYNEPWFGRWGYKFGRGCFGVTQSMYNKAIQAIRSMPLYLIIHHIGNSNHGIALIFSRYQTLSDQSLVTLGDLFCYMLDLKSRLPRETCISSYSTSALVETNCRWSPKRIEMATKVIVEALKKTEFRWVSRQEVRDAARVYIGDTGLLDFVLKSLGNHVVGNYLVCRSLNPVTKVLEYCLEDISISNVYPCNEGMVLVNNKVKDKYKITRTQLMKDMLYLYKYILIGPKPIMGSEFHSAVPLAARIILDTKYFIKDYFGDVPFPYQVDQLGCSDEKLNIYCTILLRNNKPIMQPYECITLKRSATINDLKLEVERNFREIYWGLRSFVVESIGNLSANDYGKEMVFDLIEVGGKVALEGLFGGDMMRIDINMIEQISESDPNSGVVDCTCGTIEDDGERMVSCDICEILQHTRCVRIPNDEEVPHIFLCKKCELEIVLFPSLP 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g0359 665 Pfam PHD-finger 610 655 IPR019787 -
Aed11g0359 665 SUPERFAMILY FYVE/PHD zinc finger 601 657 IPR011011 -
Aed11g0359 665 SMART PHD_3 609 655 IPR001965 -
Aed11g0359 665 ProSitePatterns Zinc finger PHD-type signature. 610 654 IPR019786 -
Aed11g0359 665 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 595 657 IPR013083 -
Aed11g0359 665 PANTHER PHD FINGER PROTEIN MALE STERILITY 1 8 665 - -
Aed11g0359 665 CDD PHD_MMD1_like 609 654 - -
Aed11g0359 665 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 8 665 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g0359 Aed-Chr11 3074664 3077647 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g0359 10 665 PHD Transcription Factor Family AT5G22260 50.517 0.0 629
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Aed11g0359 PHD 1.8e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g0359 - - gmx:100780210 1118.22