Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g0358 ATGAGCGATCACTTGGTGGTGTTCGTTGACCGTCTCGCGCCCCCTGTCCCCGTTGACCCGGTGGAGCAGCCGGCGCAGCTCCCTTCCGAGCCATCTCCGACTCCGGTCGCCGTGGATGCCGATTCCGCCGGGAGCTCCGGCACCGCACCGGCGGAGGATCATCACGTCGAGGCCGGCGACGAGGAGGAGCCGCTGATCCAGATGGCGGAGTGCCGCATCTGCCAGGAGGAGGACGGCGTTTCCAACTTGGAGACGCCCTGCGCCTGTAGCGGCAGTCTCAAGTATGCTCACCGAAAGTGTGTCCAGCATTGGTGTGATGAGAAAGGTGACATTACTTGTGAGATATGTCATCAGCCATATCAACCGGGGTATACTGCCCCTCCACCTCGTCCTAATCCTGAAGAAACTACCATTGATATAGGAGGTGGCTGGACAATATCTGGAACGCCCTTGGATTTGCGTGATCCTCGACTCTTGGCAATTGCAGAGGCAGAACGTCAGTTCTTGGATGCTGAATATGATGAGTATGCTGCTTCCAATGCCAGTGGAGCTGCATTTTGCCGCTCAGCTGCTTTAATTTTAATGGCCCTTTTACTCTTGCGGCACGCGCTTTCTGTCTCAGATGGTGATAATTCTGATGATGATCCATCCAATTTTTTCTCCCTTTTCTTGCTTCGGGCTGCTGGATTTCTATTACCTTGCTACATTATGGCTTGGGCAATCAGCATTCTGCAGCGTCGGCGACAAAGACAATCTGGGCAGCGTAGAGGTCTTCAGTTTGCAATAGCACCAGGACCATCCACAGTACACCAGGAACAAGTGTAA 825 0.5418 MSDHLVVFVDRLAPPVPVDPVEQPAQLPSEPSPTPVAVDADSAGSSGTAPAEDHHVEAGDEEEPLIQMAECRICQEEDGVSNLETPCACSGSLKYAHRKCVQHWCDEKGDITCEICHQPYQPGYTAPPPRPNPEETTIDIGGGWTISGTPLDLRDPRLLAIAEAERQFLDAEYDEYAASNASGAAFCRSAALILMALLLLRHALSVSDGDNSDDDPSNFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQSGQRRGLQFAIAPGPSTVHQEQV 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g0358 274 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 1 261 - -
Aed11g0358 274 ProSiteProfiles Zinc finger RING-CH-type profile. 63 123 IPR011016 GO:0008270
Aed11g0358 274 SUPERFAMILY RING/U-box 69 121 - -
Aed11g0358 274 MobiDBLite consensus disorder prediction 17 31 - -
Aed11g0358 274 MobiDBLite consensus disorder prediction 13 59 - -
Aed11g0358 274 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 261 IPR033275 -
Aed11g0358 274 SMART ringv_2 70 117 IPR011016 GO:0008270
Aed11g0358 274 Pfam Protein of unknown function (DUF3675) 122 241 IPR022143 -
Aed11g0358 274 CDD RING_CH-C4HC3_MARCH 71 117 - -
Aed11g0358 274 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 57 126 IPR013083 -
Aed11g0358 274 Coils Coil 159 179 - -
Aed11g0358 274 Pfam RING-variant domain 71 116 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g0358 Aed-Chr11 3067053 3071348 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g0358 70 146 C3H Transcription Factor Family AT2G37950 37.079 2.16e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g0358 - - gmx:100779674 469.929
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g0358 11 3067053 3071348 Aed11g0358 11 3067053 3071348 ECH