Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g0356 ATGGACCTAACCAAGGACACCATAGACACAATTTCTCAAACCCCTCCACAACCCACCACCACCACCAACGGCTCCCTCAAGCCACACCACCACCGCTCCACCACCGTGTCACCTCCGTCACAGCCACCGTCCACGGCGGTTTCCTACAAGGAATGTCTCAAAAACCATGCAGCCAGCATAGGCGGCCACGCGCTTGATGGCTGCGGTGAATTCATGCCCTCCTCTTCCTCCATCCCCAACGAACCGCGCTCGCTAACGTGCGCCGCGTGTGGATGCCACCGCAACTTCCACCGCCGCCGCGACACACAAGAAAAAGATAATCATCACCACCCCAACTCCAGGCCCAATTTTATAAGCTTCTACCACTCACCGCCGCCATCTCATCACGCCCCGGGATCGAGCCCGAGCCCAAGCCCGATGTCAAGCCCAAGCCCACCGCCAATCTCTCATCATTTCCCACCTTCCTCTCATCATTTCCAAGGCCCAAGAACACCCCACCACGGGCTCCTGGGCGTTGGAAATGAACATCGTCACATGAGTTTTAATTTTAACTCTTCTTTCCACCCTCGTGTTCATTCAGAACATGAACACGCGAGTGGAAAGAAGAGGCGTAGGACCAAGTTCAGCCACGAGCAGAAAGAAAGAATGCACAATTTCGCCGAGAAATTGGGGTGGAGAATGCAGAAAGGAGAAGAGAACATGGTGCAAGAGTTCTGCAAGGAGATTGGCGTTTCAAGAGGGGTGTTCAAGGTGTGGATGCACAACAATAAGAACAACAACACCAACACTAGCAGGAAGAAATCGTTGGAGCCTGGTGAAAAGATCAATGGCAATGGTAGTGATAGTACTAATAACAACAATCATCATTCTTACAACAACAACAACAACACAAATAGCACCAATGATGATGACACTCACTGA 921 0.5157 MDLTKDTIDTISQTPPQPTTTTNGSLKPHHHRSTTVSPPSQPPSTAVSYKECLKNHAASIGGHALDGCGEFMPSSSSIPNEPRSLTCAACGCHRNFHRRRDTQEKDNHHHPNSRPNFISFYHSPPPSHHAPGSSPSPSPMSSPSPPPISHHFPPSSHHFQGPRTPHHGLLGVGNEHRHMSFNFNSSFHPRVHSEHEHASGKKRRRTKFSHEQKERMHNFAEKLGWRMQKGEENMVQEFCKEIGVSRGVFKVWMHNNKNNNTNTSRKKSLEPGEKINGNGSDSTNNNNHHSYNNNNNTNSTNDDDTH 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g0356 306 Pfam ZF-HD protein dimerisation region 47 100 IPR006456 -
Aed11g0356 306 MobiDBLite consensus disorder prediction 1 47 - -
Aed11g0356 306 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 201 258 IPR006455 -
Aed11g0356 306 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 49 100 IPR006456 -
Aed11g0356 306 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 49 99 IPR006456 -
Aed11g0356 306 MobiDBLite consensus disorder prediction 128 152 - -
Aed11g0356 306 MobiDBLite consensus disorder prediction 255 306 - -
Aed11g0356 306 Gene3D - 188 263 - -
Aed11g0356 306 MobiDBLite consensus disorder prediction 100 213 - -
Aed11g0356 306 SUPERFAMILY Homeodomain-like 188 259 IPR009057 -
Aed11g0356 306 MobiDBLite consensus disorder prediction 275 306 - -
Aed11g0356 306 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 9 31 268 - -
Aed11g0356 306 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 31 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g0356 Aed-Chr11 3041315 3042235 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g0356 46 276 ZF-HD Transcription Factor Family AT1G69600 43.777 2.01e-52 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Aed11g0356 ZF-HD_dimer 1.4e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g0356 - - gmx:100785050 356.295
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g0356 11 3041315 3042235 Aed11g0356 11 3041315 3042235 ECH