Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g0350 ATGATGGAAGAAAGAAATAACAATGATGGTGAGAAACTTGATGAAGTTATGCTACCAGGGTTCAGGTTTCATCCAACTGATGAGGAGCTTGTAGGGTTTTACCTCAAGAAAAAGATTCAGCAACGCCCTTTGACTATTGAGCTCATCAAGCAGCTTGATATCTACAAATATGACCCTTGGGATCTTCCTAGTAAGACACACTTATCTCTCTCTTTGGTTCATAGCTTCAATGAATCTTGGGCTATCTGCAGAATATTCAAGAAAACCAATGCTACAGCTCAAAGAGCTTTGTCTCACTCTTGGGTATCCTCCCTACCTGAAACAAGAACCACTGATCATAATATCCTAACTAAAGATCAAAACAACACTCAGTTTTGTTCAGACAACATGCCAATGACGACAGAGAAAACAACAACCTTAGCCAGCCAGTTTTATAGTACTAACAATTACAATGATTCACAACAACCTTTATTAACCACTCATAGTAATAGTAGTACTACTCTTTGTCCCTTAGATGTTGCCTCATACAAATCCATCATCAACCAAGCCTTTGATGATTTTCCCAATATTTCAAATGGAGACCTCATGAGCACCAATTTCCTATTCTCACCCCCCTTATTTGAAACATCAACAGAAAGTACTAATTATCCCAAATCCACAATGGTCGACGTTTCTTCCATGTTGTTGAACATGTCATCCTCCTCAGTGCTTGGAGATTTCAACAACAAGACTACTTCAGAGGATACAAATTCAACCACAAACTTTGGTGGTGGGTTAATGCAAGAGGAAAACTACTGTGGTGGCTACCCAATACCATTTCTACGTGAGATATCGATGCAAACCACATTTGGTAACCAATATGATAATAATAATAATATTAATGATGCATTAATGGTAAAGGGTCCTAATGTGAATGTGAATGTGCCTCGTGTTGATGACCAAGAGTTGGAGTTGGAGACACTACAACGTTCCATTGGGTTTCCATTAAGTAGTAGTATTGGCGATGCATGGAAGTCAAATCTGCTTTGGGATACTTCCTCTTTTCCTTGTGATGTGCCATATAGTTTTTATTATTCCACAACTAAGTGCTATACTTAG 1098 0.3843 MMEERNNNDGEKLDEVMLPGFRFHPTDEELVGFYLKKKIQQRPLTIELIKQLDIYKYDPWDLPSKTHLSLSLVHSFNESWAICRIFKKTNATAQRALSHSWVSSLPETRTTDHNILTKDQNNTQFCSDNMPMTTEKTTTLASQFYSTNNYNDSQQPLLTTHSNSSTTLCPLDVASYKSIINQAFDDFPNISNGDLMSTNFLFSPPLFETSTESTNYPKSTMVDVSSMLLNMSSSSVLGDFNNKTTSEDTNSTTNFGGGLMQEENYCGGYPIPFLREISMQTTFGNQYDNNNNINDALMVKGPNVNVNVPRVDDQELELETLQRSIGFPLSSSIGDAWKSNLLWDTSSFPCDVPYSFYYSTTKCYT 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g0350 365 Gene3D NAC domain 26 171 IPR036093 GO:0003677|GO:0006355
Aed11g0350 365 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 74 363 - -
Aed11g0350 365 PANTHER PROTEIN FEZ ISOFORM X1 74 363 - -
Aed11g0350 365 PANTHER PROTEIN FEZ ISOFORM X1 1 66 - -
Aed11g0350 365 SUPERFAMILY NAC domain 16 67 IPR036093 GO:0003677|GO:0006355
Aed11g0350 365 ProSiteProfiles NAC domain profile. 17 174 IPR003441 GO:0003677|GO:0006355
Aed11g0350 365 Pfam No apical meristem (NAM) protein 19 104 IPR003441 GO:0003677|GO:0006355
Aed11g0350 365 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g0350 Aed-Chr11 2913024 2914974 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g0350 2 63 NAC Transcription Factor Family AT1G26870 72.581 2.31e-27 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Aed11g0350 NAM 3.7e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g0350 - - gmx:100783995 322.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g0350 11 2913024 2914974 Aed11g0350 11 2913024 2914974 ECH