Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g0332 ATGTCTAGCAGAAGATCTCGTTCAAGACAATCCGGTGCTTCAGCTGAGATCACTGATGCTCAAATCACCGATCTCGTTTCTAAGTTACAACAACTTATCCCTGAGCTTCGCGCTAGGCGCTCCGACAAGGTTTCAGCTGCAAAGGTATTGCAGGAGACATGCAACTACATAAAGAACTTGCACAGAGAGGTTGATGATCTAAGTGACAGGTTATCGGAGCTTTTGGCTAACACAGACTCCAACAGTGCTCAAGCAGCCATTATTAGGAGCTTACTTATGTAA 282 0.4504 MSSRRSRSRQSGASAEITDAQITDLVSKLQQLIPELRARRSDKVSAAKVLQETCNYIKNLHREVDDLSDRLSELLANTDSNSAQAAIIRSLLM 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g0332 93 Coils Coil 57 77 - -
Aed11g0332 93 PANTHER TRANSCRIPTION FACTOR PRE6 1 93 - -
Aed11g0332 93 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 60 IPR011598 GO:0046983
Aed11g0332 93 PANTHER TRANSCRIPTION FACTOR PRE 1 93 IPR044293 GO:0006355|GO:0040008|GO:0046983
Aed11g0332 93 Gene3D - 19 89 IPR036638 GO:0046983
Aed11g0332 93 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 21 82 IPR036638 GO:0046983
Aed11g0332 93 CDD bHLH_AtPRE_like 17 77 - -
Aed11g0332 93 Pfam Helix-loop-helix DNA-binding domain 21 60 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g0332 Aed-Chr11 2715677 2717155 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g0332 1 93 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47710 70.213 1.27e-36 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aed11g0332 HLH 8.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g0332 - - gmx:100804830 167.162
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g0332 11 2715677 2717155 Aed11g0332 11 2715677 2717155 ECH
Aed11g0332 11 2715677 2717155 Aed10g1026 10 9028782 9030646 ECH
Aed11g0332 11 2715677 2717155 Aed3g0399 3 2866807 2868188 ECH