Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g0330 ATGTGGCATAAAACCTGCAATGAGATGGCTTTCTTCCCAGCAAATTTCATGCTTCAAACCCCTCACCATGATGATCATCAAGCTTCACCTTCCCTCACCTCAATTCTACCTCAAGAATATCATGGGGGAGTGACCTTTCTAGGAAAGAGATCCATGTCATTTTCATCAGGAATTGAGCATGGAGAAGAGGCCAATGCCGAGGAAGATTTGTCTGATGATGGATCACAAGCCGGGGAGAAGAAGAGGAGGCTTAACATGGAACAAGTAAAGACACTCGAGAAGAGCTTTGAGTTGGGGAATAAGCTCGAACCGGAGAGGAAAATGCAGCTTGCAAGAGCTCTTGGCTTGCAGCCAAGACAAATTGCTATATGGTTCCAGAACAGAAGGGCTAGGTGGAAGACAAAGCAGTTGGAGAAAGACTACGATGTTCTCAAAAGACAGTATGAAGCTGTCAAGTCAGATAATGATGCACTTCAAGCTCAGAACCAAAAACTTCAGGCTGAGATATTGGCACTGAAAAGTAGAGAGCCAACTGAATCCATAAACCTTAACAAAGAAACAGAAGGATCCTGCAGCAATAGAAGTGAGAACAGCTCAGAGATCAAGTTGGATATCTCAACAAGGACACCAGCTATTGACAGTCCTCTATCTACACATCATCAGCAAAGTAGCAGACCCTTCTTTCCTCCTTCTTCTGCTAGGCCTGCAGCAGTTGCTCAGCTTTTCCAAACCTCTTCAAGACCAGACCTTCCATCATGCCAAAAGATTGACCAGATTGTCAAAGAAGAAAGCAGCCTAAGTAACATGTTTTGTGGCATGGATGATCAATCAGGGTTTTGGCCATGGTTGGAGCAGCAGCATTTCAATTGA 870 0.4437 MWHKTCNEMAFFPANFMLQTPHHDDHQASPSLTSILPQEYHGGVTFLGKRSMSFSSGIEHGEEANAEEDLSDDGSQAGEKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDVLKRQYEAVKSDNDALQAQNQKLQAEILALKSREPTESINLNKETEGSCSNRSENSSEIKLDISTRTPAIDSPLSTHHQQSSRPFFPPSSARPAAVAQLFQTSSRPDLPSCQKIDQIVKEESSLSNMFCGMDDQSGFWPWLEQQHFN 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g0330 289 MobiDBLite consensus disorder prediction 210 234 - -
Aed11g0330 289 CDD homeodomain 80 136 IPR001356 GO:0003677
Aed11g0330 289 Pfam Homeobox associated leucine zipper 135 175 IPR003106 GO:0006355|GO:0043565
Aed11g0330 289 Coils Coil 127 175 - -
Aed11g0330 289 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-13 7 289 - -
Aed11g0330 289 MobiDBLite consensus disorder prediction 210 229 - -
Aed11g0330 289 SMART HOX_1 78 139 IPR001356 GO:0003677
Aed11g0330 289 PRINTS Lambda-repressor HTH signature 115 131 IPR000047 GO:0003677
Aed11g0330 289 PRINTS Lambda-repressor HTH signature 106 115 IPR000047 GO:0003677
Aed11g0330 289 MobiDBLite consensus disorder prediction 180 199 - -
Aed11g0330 289 Gene3D - 72 141 - -
Aed11g0330 289 ProSiteProfiles 'Homeobox' domain profile. 75 135 IPR001356 GO:0003677
Aed11g0330 289 MobiDBLite consensus disorder prediction 183 199 - -
Aed11g0330 289 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 7 289 IPR045224 GO:0003700
Aed11g0330 289 MobiDBLite consensus disorder prediction 58 82 - -
Aed11g0330 289 SUPERFAMILY Homeodomain-like 71 137 IPR009057 -
Aed11g0330 289 Pfam Homeodomain 80 133 IPR001356 GO:0003677
Aed11g0330 289 ProSitePatterns 'Homeobox' domain signature. 110 133 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g0330 Aed-Chr11 2696589 2698804 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g0330 5 289 Homeobox Transcription Factor Family AT1G69780 64.120 7.53e-127 361
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Aed11g0330 Homeodomain 1.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g0330 K09338 - gmx:100808033 514.998
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g0330 11 2696589 2698804 Aed11g0330 11 2696589 2698804 ECH
Aed11g0330 11 2696589 2698804 Aed7g1737 7 20740179 20741213 PCT