Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g0319 ATGTGGCTTGTTCACTCCATCACCTCGAAGCATCTCTCACTACCAACCCACACTTTCGTTCCTCCAAAGTTCAATTTTCCTTTGAACCGCAATTTCTCTTTCACACCCAAATTCTCATTCTCGTCACCACTCTCTGTAAAATGCTACTACCACCCCAACCTTGTCCAGCCCAAGCCATTCCCACCGCTGCCACAACGCCCACCAGAATTGTCGCAGCAAAGGGTGTACGTGGGTTACTCCGTTTACACGAGTAAGGGCGTGCTCACCGTGACTCCTAGGCCTCCGGAATTTGAATCGAAAAGTATATTCTCACTAACAGTGAGTGAAATGGGAACTCTAATTAGCCTTGGTGCAAGGGATTCTTGGGAATTTTTTCATGAGACTCTTAAGGAGAAAAGCAATGAAGTTGAAATAAAAAAACTTTTGAAGGTGGAGCCACTTCTGGATGCTACTGGTCACGTATTTAGCTTAAGCGTTCATAAAAAGCCTGTGAACATGGAGGGAATTCAGACAAGCATCTTTCTCCCTGTCGTAAGGGCAGAGCTAGTAGTTTTAAAGACACTTTTCAATTATATCATGCCATACCTTCTAGGTTGGAATGCCTTTGGAAACTCCATAACGCCTGAGGTATATAGTCAAGTGAATAGTAGCAACTCCAGATATGGAGCAGACAATCAATGGAACAGATAG 690 0.4406 MWLVHSITSKHLSLPTHTFVPPKFNFPLNRNFSFTPKFSFSSPLSVKCYYHPNLVQPKPFPPLPQRPPELSQQRVYVGYSVYTSKGVLTVTPRPPEFESKSIFSLTVSEMGTLISLGARDSWEFFHETLKEKSNEVEIKKLLKVEPLLDATGHVFSLSVHKKPVNMEGIQTSIFLPVVRAELVVLKTLFNYIMPYLLGWNAFGNSITPEVYSQVNSSNSRYGADNQWNR 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g0319 229 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 100 229 IPR013742 GO:0003697|GO:0006355|GO:0006952
Aed11g0319 229 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 70 99 IPR013742 GO:0003697|GO:0006355|GO:0006952
Aed11g0319 229 SUPERFAMILY ssDNA-binding transcriptional regulator domain 73 229 IPR009044 GO:0003677|GO:0006355
Aed11g0319 229 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY1, CHLOROPLASTIC 70 99 - -
Aed11g0319 229 Pfam Whirly transcription factor 97 187 IPR013742 GO:0003697|GO:0006355|GO:0006952
Aed11g0319 229 Gene3D Transcriptional Coactivator Pc4; Chain A 100 218 IPR009044 GO:0003677|GO:0006355
Aed11g0319 229 Gene3D Transcriptional Coactivator Pc4; Chain A 68 99 IPR009044 GO:0003677|GO:0006355
Aed11g0319 229 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY1, CHLOROPLASTIC 100 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g0319 Aed-Chr11 2578394 2583175 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g0319 67 229 Whirly Transcription Factor Family AT1G14410 44.845 6.89e-53 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Aed11g0319 Whirly 2.1e-22 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g0319 - - gmx:100797370 341.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g0319 11 2578394 2583175 Aed11g0319 11 2578394 2583175 ECH
Aed11g0319 11 2578394 2583175 Aed7g1753 7 20912230 20915378 PCT