Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g0313 ATGTACAAATTCTTGGTTTTAACCTGTTTGGTAGCCATCATACCTACCTTGCATGCCAATATCAAAGAGGATGAACCTTATTGGCACAGGCAAAATGAAACACTTAACCGTGAACCTTATTGGAGGGAAAGACAAGCAGTTGCTGAAAAAGAGAACAAAGAAGCTTATAATCCTGACCCATATGCACTCACCAGCAACTTGACCAATAGTGTTAGCCAAATCATAGAAGGTGATGAGAATAAACAGAGAAGGAAATTGAAGGGAGTAGGTGGTGGTAAGTGCTTGGCAACAAACCCAATTGACAGATGTTGGAGGTGTGACCCCAATTGGGCAAACAACCGCAAGAAGCTTGCAGATTGTGTGCAAGGTTTTGGCAGAAACACTATTGGTGGAAAGAATGGTCCTTTCTATGTGGTAACAAGTGACTTAGATAATGATTTGGTGAATCTTGTTCCTGGTACCCTTAGGCATGCAGTTACAAGAAATGGACCCTTGTGGATCACCTTTGCTCGCAGCATGAAAATTAGGCTCACCCAGGAGCTCATTATGACGGGTGACAAGACTATCGATGGAAGAGGAGTTGATGTCTACATTACTTCTGGGGCAGGTTTTACCATCCAGTTTGTCAAGAATGTGATCATCCATGGAATCAAGATTTTTGATATTCAGGTTGGAACTGGTGGACTTATTAGAGATTCTGAGACACACTATGGTTTAAGGACTCAGAGTGATGGCGATGGAATTTCCATCTTTGGCTCTAGCAATGTTTGGATTGACCATGTCTCCATGCGAAACTGCAGAGATGGACTGATAGATGCAATTCAGGGTTCTACTGGGGATAAGATAATGCAGATCACATTGGCATTCAACCACTTTGGCAAGAGATTAATCCAAAGGATGCCAAGGTGCAGATTTGGTTTTGTCCATGTGGTTAACAACGACTACACTCATTGGGAAATGTATGCCATTGGTGGTAGCAAGCATCCTACCATTATTAGTGAGGGAAACAGATTCATAGCCCCTGACAACATTCATGCTAAAGAGATAACAAAGAGGGAGTACTCACCAGAGCAAGAGTGGAAAACTTGGGAATGGAGATCAATCAATGATGAGTACATGAATGGAGCATATTTCAGAGAAGGCGGGAGCATACTAAAAGACAGGCCATTCACAAGGCAGGACATGATGACAGCAAGGCCTGGATCATATGTGGGAAGGCTCACTCGCTATTCTGGAAGCCTTAAGTGCGTGGTGGGAAAGCCCTGTTAA 1269 0.4318 MYKFLVLTCLVAIIPTLHANIKEDEPYWHRQNETLNREPYWRERQAVAEKENKEAYNPDPYALTSNLTNSVSQIIEGDENKQRRKLKGVGGGKCLATNPIDRCWRCDPNWANNRKKLADCVQGFGRNTIGGKNGPFYVVTSDLDNDLVNLVPGTLRHAVTRNGPLWITFARSMKIRLTQELIMTGDKTIDGRGVDVYITSGAGFTIQFVKNVIIHGIKIFDIQVGTGGLIRDSETHYGLRTQSDGDGISIFGSSNVWIDHVSMRNCRDGLIDAIQGSTGDKIMQITLAFNHFGKRLIQRMPRCRFGFVHVVNNDYTHWEMYAIGGSKHPTIISEGNRFIAPDNIHAKEITKREYSPEQEWKTWEWRSINDEYMNGAYFREGGSILKDRPFTRQDMMTARPGSYVGRLTRYSGSLKCVVGKPC 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g0313 422 PANTHER PECTATE LYASE 18-RELATED 279 422 IPR045032 GO:0030570
Aed11g0313 422 SUPERFAMILY Pectin lyase-like 98 412 IPR011050 -
Aed11g0313 422 PRINTS Pollen allergen Amb family signature 393 416 IPR018082 -
Aed11g0313 422 PRINTS Pollen allergen Amb family signature 120 137 IPR018082 -
Aed11g0313 422 PRINTS Pollen allergen Amb family signature 180 196 IPR018082 -
Aed11g0313 422 PRINTS Pollen allergen Amb family signature 363 387 IPR018082 -
Aed11g0313 422 PRINTS Pollen allergen Amb family signature 144 169 IPR018082 -
Aed11g0313 422 PANTHER PECTATE LYASE 18-RELATED 4 278 IPR045032 GO:0030570
Aed11g0313 422 SMART amb_all 172 344 IPR002022 -
Aed11g0313 422 Pfam Pectate lyase, N terminus 39 86 IPR007524 GO:0030570
Aed11g0313 422 PANTHER PECTATE LYASE 4 278 - -
Aed11g0313 422 Pfam Pectate lyase 282 338 IPR002022 -
Aed11g0313 422 Gene3D - 97 279 IPR012334 -
Aed11g0313 422 Gene3D - 280 415 IPR012334 -
Aed11g0313 422 PANTHER PECTATE LYASE 279 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g0313 Aed-Chr11 2560021 2563025 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g0313 2 422 Polysaccharide Lyase AT1G14420 53.463 7.46e-168 477
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g0313 K01728 - gmx:100796307 723.776