Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g0304 ATGCCGATGGAGATGGAGCTGGAGCTGGAGCTAACAACAGCAATCCAGCAATCCTTCGACGAGCGTTACACGCGCCACGCGCGCGACTCGCTCGACGAATTGTCTGAGAGCTTCACCATAACGGACCCCTCAATCCCGGGCCATCCAATCGTCTTCGCGAGCCCGGGCTTCCTCAAGCTCACGGGCTACGCGCGCGGCGAGGTCGTGGGCCGGAGCGCCTCCGTCTTCCAGGGCCCGTGCACCTCCCGGAAGTCCGTCGCGGAAATTCGCGAGGCCGTCAGAGAGGAGCGCGCCGCGCAGGTCGTCATTCTCAACTACCGCAAGGACGGCACTCCGTTCTGGATGCTCTTCCAAGTCTCCCCCGTTTTCGACGGCAGCACCGTCGTGCACTTCGTAGCCGTGCAGGTGCCACTTCGGGAAAATGACAGTGGCTCCGGCGGCGTCAGGGATTTCGGGTTCGGGTTCTGTCGGAAGGAAGTATGCGCTGATTCGTTGGCGGAACTTGGTCGTGTTTGTTCCTTGGACCAAGTACTGGAACGTGATGTCAGAGAATTGGAGAGAGAAGAGGCGTGTGAGGCCAGTGATGAGGAGAAGCGAAGTGCTGTTAATGCCATGGACAATATATTTTCTGTACTAACCCATTACAGTGAGGCCACAGGGAGATTGGTGTGTAGAAAGAGGTGCAGCAGCAGCATTCCTGACGTGGCTCTTTTAAGCACATCCTTGATTATTTCTCTTTGTAGAATCAAACAAAGCTTTGTATTAACTAATCCACATTTACCAGACATGCCTATTGTTTATGCTAGTGATGCCTTCTTGAAATTGACAGGTTATGCAAAAAATGAAGTTTTGGGCCGCAACTGTAGATTCTTAGGTGGAACAGATACTGATACCTCGACTTTACATCTGATAAGGGAAAGCATTAAAACTGAACAACCATGCACAGTACGTATTTTGAATTACAGGAAGGACAATAGCTCATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGATGCTTCTGGCAAGGTTGCATACTTTGTGGGAGTTCAAATAGAAGACAACAACAATAAAAACGATGATAATAGTCAGTGTTTGAGTCCTGAGAAGAGGCAGCTTAGTGTGGTTGGTGTAGTCAAGGTTGCAGTGAGGAGTTTATCAATGAATGCAGGATCTTCCAAGTCGTAG 1188 0.5034 MPMEMELELELTTAIQQSFDERYTRHARDSLDELSESFTITDPSIPGHPIVFASPGFLKLTGYARGEVVGRSASVFQGPCTSRKSVAEIREAVREERAAQVVILNYRKDGTPFWMLFQVSPVFDGSTVVHFVAVQVPLRENDSGSGGVRDFGFGFCRKEVCADSLAELGRVCSLDQVLERDVRELEREEACEASDEEKRSAVNAMDNIFSVLTHYSEATGRLVCRKRCSSSIPDVALLSTSLIISLCRIKQSFVLTNPHLPDMPIVYASDAFLKLTGYAKNEVLGRNCRFLGGTDTDTSTLHLIRESIKTEQPCTVRILNYRKDNSSFWNFLHISPVRDASGKVAYFVGVQIEDNNNKNDDNSQCLSPEKRQLSVVGVVKVAVRSLSMNAGSSKS 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g0304 395 Gene3D PAS domain 20 142 - -
Aed11g0304 395 ProSiteProfiles PAC domain profile. 312 366 IPR000700 -
Aed11g0304 395 Gene3D PAS domain 252 393 - -
Aed11g0304 395 ProSiteProfiles PAS repeat profile. 265 287 IPR000014 -
Aed11g0304 395 CDD PAS 50 125 IPR000014 -
Aed11g0304 395 ProSiteProfiles PAS repeat profile. 23 96 IPR000014 -
Aed11g0304 395 SUPERFAMILY PYP-like sensor domain (PAS domain) 38 134 IPR035965 -
Aed11g0304 395 Pfam PAS domain 46 135 IPR000014 -
Aed11g0304 395 Pfam PAS domain 252 351 IPR000014 -
Aed11g0304 395 TIGRFAM sensory_box: PAS domain S-box protein 50 134 IPR000014 -
Aed11g0304 395 TIGRFAM sensory_box: PAS domain S-box protein 265 350 IPR000014 -
Aed11g0304 395 SMART pas_2 240 313 IPR000014 -
Aed11g0304 395 SMART pas_2 25 94 IPR000014 -
Aed11g0304 395 CDD PAS 261 350 IPR000014 -
Aed11g0304 395 SMART pac_2 100 141 IPR001610 -
Aed11g0304 395 SMART pac_2 315 357 IPR001610 -
Aed11g0304 395 PANTHER PROTEIN TWIN LOV 1 15 394 - -
Aed11g0304 395 SUPERFAMILY PYP-like sensor domain (PAS domain) 255 351 IPR035965 -
Aed11g0304 395 PANTHER PROTEIN TWIN LOV 1 15 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g0304 Aed-Chr11 2485955 2490126 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g0304 238 376 AGC Kinase Gene Family AT5G58140 38.129 3.71e-29 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g0304 - - gmx:100785562 612.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g0304 11 2485955 2490126 Aed11g0304 11 2485955 2490126 ECH