Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g0300 ATGGCGGGTGGCAAGCTTTATGCTGGTTCAAACATGTCACTCCTCCTCCAAAACGAAAGACTTCCTTGCTCCTCTGAAGTCCTTGAGTCTCTTTGGGCTCACTCCTCTAACCCTGCTTCCTTCCAAGGTTCAAAGTCTGTGGTTGATTTTGAGAATGTTAGTGGGAGCAGGGTGGTGACGGATAGGCCTTTCTTCCAAGCGTTGGAGAAGGAAGAGAACTGTGATGAGGATTACGAGGGGTGTTTCCATCAACCGGGGAAGAAAAGAAGGCTCACAAGCGAACAAGTTCAGTTCCTTGAAAGGAACTTCGAGGTGGAGAACAAGCTTGAACCTGAAAGGAAGGTCCAACTTGCAAAAGAGCTTGGCTTGCAGCCAAGGCAAGTTGCTATATGGTTCCAAAACCGAAGGGCAAGGTTCAAGACCAAGCAGCTTGAGAAAGACTATGGCGTGTTGAAAGCTAGCTATGACAGACTCAAAGGTGACTATGAAAGTCTTGTTCAAGAGAATGACAAGTTAAAAGCAGAGGTGAATTCTCTGGAGAGCAAATTGATTCTTAGAGATAAAGAGAAGGAGGAGAATTGTGATTGTGATGACAAGTCATCTCCCGATGCTGTCAATTCTTCATCACCCCACAACAACAAGGAGCCTATTGTTATTATGGATTTAATTTCAAATGCAACAACAACTGAAAATGGGACCAAAGGATCACTCCCTATTATGGTAACATGCAAGCAAGAAGATGCCAATTCAGCCAAAAGTGATGTGCTTGATTCGGATAGTCCACATTGCACTCCTTACTCATTCGTGGAGCCTGCTGATTCCTCCCACGCCTTTGAACCGGACCATTCAGACTTCTCCCAAGATGAAGAGGATAACCTTAGTGAAAACCTTTTGACTCTTCCTTCTTCTTGTTGTTTACCCAAGGCTGAAGAACCCTGCTATGATCACCCTCCTGAAAACTCTTGTAATTTTGGCTTCCAGGTTGAGGATCAAACCTTCTGTTTCTGGCCTTACTGA 1017 0.4484 MAGGKLYAGSNMSLLLQNERLPCSSEVLESLWAHSSNPASFQGSKSVVDFENVSGSRVVTDRPFFQALEKEENCDEDYEGCFHQPGKKRRLTSEQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARFKTKQLEKDYGVLKASYDRLKGDYESLVQENDKLKAEVNSLESKLILRDKEKEENCDCDDKSSPDAVNSSSPHNNKEPIVIMDLISNATTTENGTKGSLPIMVTCKQEDANSAKSDVLDSDSPHCTPYSFVEPADSSHAFEPDHSDFSQDEEDNLSENLLTLPSSCCLPKAEEPCYDHPPENSCNFGFQVEDQTFCFWPY 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g0300 338 Gene3D - 81 147 - -
Aed11g0300 338 ProSitePatterns 'Homeobox' domain signature. 117 140 IPR017970 GO:0000981|GO:0006355
Aed11g0300 338 MobiDBLite consensus disorder prediction 272 292 - -
Aed11g0300 338 MobiDBLite consensus disorder prediction 190 216 - -
Aed11g0300 338 MobiDBLite consensus disorder prediction 275 289 - -
Aed11g0300 338 PANTHER HOMEOBOX LEUCINE ZIPPER FAMILY PROTEIN 1 338 - -
Aed11g0300 338 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 338 IPR045224 GO:0003700
Aed11g0300 338 PRINTS Lambda-repressor HTH signature 113 122 IPR000047 GO:0003677
Aed11g0300 338 PRINTS Lambda-repressor HTH signature 122 138 IPR000047 GO:0003677
Aed11g0300 338 Coils Coil 155 182 - -
Aed11g0300 338 CDD homeodomain 85 143 IPR001356 GO:0003677
Aed11g0300 338 MobiDBLite consensus disorder prediction 200 214 - -
Aed11g0300 338 Pfam Homeodomain 87 140 IPR001356 GO:0003677
Aed11g0300 338 SUPERFAMILY Homeodomain-like 78 144 IPR009057 -
Aed11g0300 338 SMART HOX_1 84 146 IPR001356 GO:0003677
Aed11g0300 338 Pfam Homeobox associated leucine zipper 142 183 IPR003106 GO:0006355|GO:0043565
Aed11g0300 338 ProSiteProfiles 'Homeobox' domain profile. 82 142 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g0300 Aed-Chr11 2450625 2453061 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g0300 43 183 Homeobox Transcription Factor Family AT3G01470 56.738 7.38e-46 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Aed11g0300 Homeodomain 4.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g0300 - K09338 gmx:547565 482.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g0300 11 2450625 2453061 Aed11g0300 11 2450625 2453061 ECH
Aed7g1737 7 20740179 20741213 Aed11g0300 11 2450625 2453061 PCT