Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g0274 ATGGATCCGGCGGCGATGATGAACGCCGCCGCCAACGCCACGTCGTTTCACCTGTCAGAGATCTGGCAGTTCCCGCCTGCCAACGCGCTGGACGCGCTGGGCCTTAGGCGGCCCAACTTCGCCCACGCCTTCGCCGACGACCACCCGCCCAGCATTGCCCACAAGAAGCGCCGCGACGCCGCCGCCCAGGACCACGATTCGGCTAAGGCCGCCTCCACCACCAATGCCGTGAATGAGGGTGGTGGTGGTGATGGGAAACGGGTTAAGAAGACGACGACGACAACGACGGGGAACAAGAGTGAAGGAGAAAGCAGTTCAGGAAAGCCTGCGGAGCAAAGTGGAAAGCCACCTTCGGAGCCTCCAAAGCTAGAATACATTCATGTCCGAGCCAGAAGGGGTCAAGCTACCGATAGCCACAGTCTTGCAGAAAGAGCAAGACGGGAAAAGATCAGTGAGAGGATGAAAATTCTTCAGGATTTAGTCCCTGGTTGTAATAAGGTTATTGGGAAAGCATTGGTCCTTGATGAGATAATTAATTATATCCAATCGCTTCAGCGGCAAGTAGAGTTTTTGTCAATGAAGCTTGAAGCAGTAAATTCAAGAATGGCCCCCGGAATTGACGTGTTTCCTCCTAAAGATTTTGATCAGCAAACATTTGATACAAGTGGCATGCCATTCACTTCTCAAGCTACAAGAGACTATAGCAGAGGTTCATCACCCGAATGGTTACACATGCAGGTTGGAAGTGGTTTTGAAAGAGCAACGTAG 768 0.5221 MDPAAMMNAAANATSFHLSEIWQFPPANALDALGLRRPNFAHAFADDHPPSIAHKKRRDAAAQDHDSAKAASTTNAVNEGGGGDGKRVKKTTTTTTGNKSEGESSSGKPAEQSGKPPSEPPKLEYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMAPGIDVFPPKDFDQQTFDTSGMPFTSQATRDYSRGSSPEWLHMQVGSGFERAT 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g0274 255 MobiDBLite consensus disorder prediction 42 122 - -
Aed11g0274 255 MobiDBLite consensus disorder prediction 48 65 - -
Aed11g0274 255 PANTHER BNAC05G07950D PROTEIN 1 255 - -
Aed11g0274 255 CDD bHLH_AtBPE_like 124 209 - -
Aed11g0274 255 SMART finulus 140 190 IPR011598 GO:0046983
Aed11g0274 255 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 255 IPR024097 GO:0006355
Aed11g0274 255 MobiDBLite consensus disorder prediction 88 112 - -
Aed11g0274 255 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 134 184 IPR011598 GO:0046983
Aed11g0274 255 Gene3D - 131 204 IPR036638 GO:0046983
Aed11g0274 255 Pfam Helix-loop-helix DNA-binding domain 138 185 IPR011598 GO:0046983
Aed11g0274 255 Coils Coil 181 201 - -
Aed11g0274 255 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 132 202 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g0274 Aed-Chr11 2283860 2288003 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g0274 1 239 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G59640 51.311 2.19e-67 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aed11g0274 HLH 1.9e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g0274 - - gmx:100794893 383.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g0274 11 2283860 2288003 Aed11g0274 11 2283860 2288003 ECH
Aed11g0274 11 2283860 2288003 Aed7g1717 7 20589086 20592265 PCT