Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g0263 TTTGGCTCCTCCGAGGTGATATCTCTTCGCGTTGATTCCTTGCGGTTAGATCTGAACTGTGCTCGTTGCTATTGCTCTTGCTCGAATGAGAAGCCTGAGATGAAGAGGTCCAGAGATGAAGTTTTCACCAGTTGCTCTCAACTCAAACGGCCTGTGATGTCTTCACGAGGAGAACCGTCTGGGCCACCGCAGATGACGAATGGAGGTGCTCAGAAACTGACAACTAATGATGCCCTAGCATATCTCAAGGCTGTAAAGGATATATTTCAGGATAAGAGGGACAAGTATGATGACTTTCTGGAAGTTATGAAAGATTTCAAGGCTCAAAGAATTGATACTGCAGGGGTCATTGGAAGAGTGAAGGATCTGTTTAAAGGCCATAGGAATCTTATATTGGGATTTAACACCTTCTTGCCTAAGGGTTATGAAATAACACTTGCATCGGAGGATGAACAACCTGCCCCAAAAAAACCTGTTGAATTTGAAGAAGCTATAAGTTTTGTGAACAAGATAAAGACTCGTTTTCAAGGTGATGATCATGTCTACAAATCATTTCTTGACATATTGAATATGTATAGAAAGGAAAACAAGTCTATTACTGAGGTTTACCAGGAGGTTGCGGCTATTTTCCAGGACCACCGTGATCTTCTTGATGAGTTTACTCATTTTCTTCCAGAAGCTTCTGCAGCTGCCTCTACTCATTATGCTTCTGCTCGAAATTCTTTGCTTCGTGATAGGAGCTCTGCAATGCCAACCATACGGCAAATGCATGTTGAAAAGCGAGAAAGGACCATGGTTTCACATGGTGATCGTGACCCCAGTGTTGATCGTCCTGACCCAGATCACGACAGAGGTTTGTTACGGATAGAGATAGAGAAAGAGAGGAGACGTGTGGAGAAGGAAAAGGAACGTAGAGAAGATAGAGACAAGAGAGATCGTGAAAGGGATGATAGAGATTATGAGCACGATGGGGCTCGAGATAGGGAGCGATTCTCTCTCAAACGGAATCGTAAGGCTGAAGACTCTGGAGCTGAACCATTGCTTGATGCAGATGAGAATTTCGGTACGCGTCCTATGTCATCCACTTGTGATGATAAAAATTCTCTGAAAAGTATGTATAGTCAAGAGTTTGCTTTCTGTGAAAAGGTGGGCGATTTACTGGGAAAATATCCAGATCTTATGGAGGGATTTAATGAATTTTTGCTTCAATCTGAAAAGAACGATGGTGGATTCCTTGCTGGTGTTATGAATAAGATTTTATCATCTGATCCAAAAAATTTCTCATGTTCACCAGAGTCCTTATGGAATGATGGACAGGGACTGAAACAAATTAAGGTTGAAGACAGGGATAGAGATCGGGATCGAGATAGAGACCGTTATAGGGATGATGGGATGAAAGCAAGGGACCATGAACGTGAATTTCGAGAAAGGGACAAATCTACTGCGATTGCCAACAAGGATGTTTTAGGTTCTAAGATGTCTCTATATCCCAGCAAGGAGAAGTATTTATCCAAACCTATAAATGAGCTGGACCTTTCTAACTGCGACCAGTGCACTCCTAGTTACCGCCTCTTACCAAAAAATTACCCAATACCTTTAGCTAGCCAGAAAACAGAACTTGGTGCTGAAGTGTTGAATGATCACTGGGTGTCTGTCACTTCAGGAAGTGAGGATTATTCCTTCAAACATATGCGCAAAAATCAGTATGAAGAGAGCTTGTTTAGATGTGAAGATGATAGGTTTGAACTTGACATGTTGTTAGAGTCTGTAAATGTGACAACCAAACGAGTAGAAGAGCTGTTAGACAAGATCAATAGTAATATAATTAAGGGAGACAGCCCAATTCGTATTGAGGAGCACTTAACAGCTATAAATCTTAGGTGTATCGAACGATTATATGGTGACCATGGGCTTGATGTGATGGAAGTGTTAAGGAAGAATTCACCTCTAGCTTTGCCTGTGATATTAACACGCTTGAAGCAGAAACAGGAAGAGTGGGCAAGGTGCCGTGCTGATTTTAGTAAAGTTTGGGCTGAAATATATGCTAAGAACTATCACAAATCTCTTGATCATCGTAGCTTCTACTTTAAGCAACAGGATACAAAAAGCTTGAGCACGAAAGCCTTTCTGGCAGAAATCAAAGAAATCAGTGAACAGAAACGCAAAGAAGATGATGTTCTTCTTGCTATTGCTGCTGGAAATAGACGGTCAATTCTTCCAAACTTGGAGTTTAAGTATTCTGATCCAGATATTCATGAAGATTTGTATCAGCTCATAAAATATTCCTGTGGAGAAATTTGCACAACTGAACACGTGGATAAAGTTATGAAGATTTGGACAACATTTTTAGAACCCATGCTTTGTGTTCCTTGTCGGCCCCAGGGTGCAGAGGATACAGAAGATGTTGTCAAGGCTAAGAATAATAGTGTCAAAAATGGCACTGCAAGTGTTGCTGAAAGTGACGGTAGCCCTGTTGTGGGTGCTACCATAATGAATCCAAAGCATATAAATGTTTCCAGAAATGGGGATGAATGTATGCCATTAGATCAATCAACTTCTAGTAAAGCATGGCAGTCAAATGGTGATAGTGGGGTTAGAGAGGATATGTATCTTGATGACCGTGCATTGCATAAAACTGAAACTTTGGGCAGCAATACACAGCATGCTAAAATGAATAGTATTGCATTAACACCTGATGAACTATCAGGGTTTACCAATAAGCAAGACCAGTCCAGTGAACGGTTAGTGAATGCTAATGTCTCACCATCATCTGGAATGGAGCAAAGCAATGGAAGGACAAACATAGATATTTTGTCAGGACTCACTGCCACTCCAACTAGACCTGGTAATGCTTCTGTTGAGGGAGGACTTGATATACCGTCATCAGAGGGTGGTGATTCTACAAAACTGGGTACATCCACAAATGGGGCTGTCACTGGAGGCACCAAAGTTCACCGATACCAAGAGGAATCAGTTCGACCCTTCAAAAGTGAAAGAGAAGAGGGTGAGTTATCTCCTAATGGAGACTTTGAAGAAGATAACTATGCAGTTTATGGAGATAATGGTTTGGATGCAGAACATAAAGGAAAGGATGGTGATGTGAGTCAGCAATACCAAAATAGACATGGGGAAGAAGTTTGTGGTGAAACTAGAGGAGAAAATGATGCTGATGCTGATGCTGATGATGAAGGTGAAGAAAGTCCTCACAGGTCATCAGAGGACAGTGAAAATGCATCTGAAAATGTTGATGTTTCTGGAAGTGAGTCTGCTGATGCTGAGGAGTGTTCTCGAGAAGAGCACGAGGATGGGGAACATGATAACAAGGCCGAGAGTGAAGGTGAAGCCGAAGGAATAGCTGATGCCCATGATGTTGAAGGAGATGGGATGTCATTGCCATATTCTGAACGCTTTCTACTAACTGCGAAGCCTCTAGCAAAGCATGTTCCTCCAATGTTACATGAGAAGGACAGGAATTCACTAGTTTTCTATGGAAATGATTCCTTTTATGTGCTGCTTAGACTTCATCAGACATTGTATGAGAGGATACAATCAGCAAAGATTAACTCATCATCTGCTGATAGGAAATGGAAGGCTTCAAGTGATACAAGCTCCACTGATCAATATGACAGGTTCATGAATGCCCTTTACAGTTTGCTGGATGGTTCTTCTGATAATACAAAATTTGAGGATGATTGTCGAGCTATAATTGGAATTCAATCATATGTCTTATTCACATTAGACAAGCTGATATATAAACTTGTTAAACAGCTTCAAGCTGTTGCTGCTGATGAGATGGATAATAAGCTTTTACAACTGCAAGCATATGAGAAATCGAGAAAACCCGGAAAATTTGTTGACATAGTTTATCATGAAAATGCCCGTGTTCTTCTCCATGATGAGAACATATATCGTATTGAATATTCACCTGGACCAATGGAACTGTCTATTCAACTGATGGACTCTGGACATGATAAACCTGAAGTGACTGCTGTGTCGATGGACCCTAATTTTTCAACCTATCTACACAATGACTTCCTGTCTGTGGTCCCTGACAAAAAAGAGAAGTCAGGAATTTGCTTGAAGAGGAATAAACGTCTATATGCTGGCAATGATGAATTTTCAAGCCAGGCTATGGAAGGACTACAAATTATTAATGGTCTGGAGTGTAAGATAGCTTGCAGTTCATCTAAGACACCGAAGACTTTTTGTTTCGGACAAGAAGGAAAAGAAGAGCCTTGCGTCCTAAGAGTTCAGGCGCTCATGAACAGGCACAGTCTTCAAACATTCGTTCAAGCAGACTACAACGATTCCGCAGTTTGTTTTCCATTGCATGAAAGTGTCCATTTTGAGCTTTGGGCATGTAATATTAGTCAAATGTCATTGGCAGAGGCGCCGGATGAAAACGGCATCCTAAGTTGA 4419 0.4125 FGSSEVISLRVDSLRLDLNCARCYCSCSNEKPEMKRSRDEVFTSCSQLKRPVMSSRGEPSGPPQMTNGGAQKLTTNDALAYLKAVKDIFQDKRDKYDDFLEVMKDFKAQRIDTAGVIGRVKDLFKGHRNLILGFNTFLPKGYEITLASEDEQPAPKKPVEFEEAISFVNKIKTRFQGDDHVYKSFLDILNMYRKENKSITEVYQEVAAIFQDHRDLLDEFTHFLPEASAAASTHYASARNSLLRDRSSAMPTIRQMHVEKRERTMVSHGDRDPSVDRPDPDHDRGLLRIEIEKERRRVEKEKERREDRDKRDRERDDRDYEHDGARDRERFSLKRNRKAEDSGAEPLLDADENFGTRPMSSTCDDKNSLKSMYSQEFAFCEKVGDLLGKYPDLMEGFNEFLLQSEKNDGGFLAGVMNKILSSDPKNFSCSPESLWNDGQGLKQIKVEDRDRDRDRDRDRYRDDGMKARDHEREFRERDKSTAIANKDVLGSKMSLYPSKEKYLSKPINELDLSNCDQCTPSYRLLPKNYPIPLASQKTELGAEVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVTTKRVEELLDKINSNIIKGDSPIRIEEHLTAINLRCIERLYGDHGLDVMEVLRKNSPLALPVILTRLKQKQEEWARCRADFSKVWAEIYAKNYHKSLDHRSFYFKQQDTKSLSTKAFLAEIKEISEQKRKEDDVLLAIAAGNRRSILPNLEFKYSDPDIHEDLYQLIKYSCGEICTTEHVDKVMKIWTTFLEPMLCVPCRPQGAEDTEDVVKAKNNSVKNGTASVAESDGSPVVGATIMNPKHINVSRNGDECMPLDQSTSSKAWQSNGDSGVREDMYLDDRALHKTETLGSNTQHAKMNSIALTPDELSGFTNKQDQSSERLVNANVSPSSGMEQSNGRTNIDILSGLTATPTRPGNASVEGGLDIPSSEGGDSTKLGTSTNGAVTGGTKVHRYQEESVRPFKSEREEGELSPNGDFEEDNYAVYGDNGLDAEHKGKDGDVSQQYQNRHGEEVCGETRGENDADADADDEGEESPHRSSEDSENASENVDVSGSESADAEECSREEHEDGEHDNKAESEGEAEGIADAHDVEGDGMSLPYSERFLLTAKPLAKHVPPMLHEKDRNSLVFYGNDSFYVLLRLHQTLYERIQSAKINSSSADRKWKASSDTSSTDQYDRFMNALYSLLDGSSDNTKFEDDCRAIIGIQSYVLFTLDKLIYKLVKQLQAVAADEMDNKLLQLQAYEKSRKPGKFVDIVYHENARVLLHDENIYRIEYSPGPMELSIQLMDSGHDKPEVTAVSMDPNFSTYLHNDFLSVVPDKKEKSGICLKRNKRLYAGNDEFSSQAMEGLQIINGLECKIACSSSKTPKTFCFGQEGKEEPCVLRVQALMNRHSLQTFVQADYNDSAVCFPLHESVHFELWACNISQMSLAEAPDENGILS 1472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g0263 1472 MobiDBLite consensus disorder prediction 965 981 - -
Aed11g0263 1472 SUPERFAMILY PAH2 domain 155 225 IPR036600 GO:0006355
Aed11g0263 1472 Pfam Paired amphipathic helix repeat 94 138 IPR003822 GO:0006355
Aed11g0263 1472 Pfam Paired amphipathic helix repeat 180 224 IPR003822 GO:0006355
Aed11g0263 1472 MobiDBLite consensus disorder prediction 905 949 - -
Aed11g0263 1472 MobiDBLite consensus disorder prediction 837 864 - -
Aed11g0263 1472 MobiDBLite consensus disorder prediction 445 478 - -
Aed11g0263 1472 Gene3D Paired amphipathic helix 156 228 IPR036600 GO:0006355
Aed11g0263 1472 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 383 423 - -
Aed11g0263 1472 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 963 1399 - -
Aed11g0263 1472 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 486 849 - -
Aed11g0263 1472 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 39 383 - -
Aed11g0263 1472 MobiDBLite consensus disorder prediction 255 345 - -
Aed11g0263 1472 MobiDBLite consensus disorder prediction 844 861 - -
Aed11g0263 1472 MobiDBLite consensus disorder prediction 986 1004 - -
Aed11g0263 1472 MobiDBLite consensus disorder prediction 905 1115 - -
Aed11g0263 1472 Gene3D Paired amphipathic helix 77 139 IPR036600 GO:0006355
Aed11g0263 1472 MobiDBLite consensus disorder prediction 242 365 - -
Aed11g0263 1472 SUPERFAMILY PAH2 domain 71 140 IPR036600 GO:0006355
Aed11g0263 1472 MobiDBLite consensus disorder prediction 1063 1077 - -
Aed11g0263 1472 ProSiteProfiles PAH domain profile. 157 227 IPR003822 GO:0006355
Aed11g0263 1472 MobiDBLite consensus disorder prediction 1090 1115 - -
Aed11g0263 1472 Pfam Sin3 family co-repressor 517 607 IPR013194 -
Aed11g0263 1472 ProSiteProfiles PAH domain profile. 71 141 IPR003822 GO:0006355
Aed11g0263 1472 Coils Coil 284 311 - -
Aed11g0263 1472 MobiDBLite consensus disorder prediction 1023 1054 - -
Aed11g0263 1472 MobiDBLite consensus disorder prediction 51 70 - -
Aed11g0263 1472 Pfam C-terminal domain of Sin3a protein 1162 1397 IPR031693 -
Aed11g0263 1472 PANTHER SIN3B-RELATED 383 423 IPR039774 GO:0003714
Aed11g0263 1472 PANTHER SIN3B-RELATED 963 1399 IPR039774 GO:0003714
Aed11g0263 1472 PANTHER SIN3B-RELATED 486 849 IPR039774 GO:0003714
Aed11g0263 1472 PANTHER SIN3B-RELATED 39 383 IPR039774 GO:0003714
Aed11g0263 1472 SMART hdac_interact2seq4b 514 614 IPR013194 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g0263 Aed-Chr11 2167199 2178888 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g0263 63 153 WRKY Transcription Factor Family AT4G12020 58.065 2.47e-23 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Aed11g0263 Sin3a_C 1.4e-53 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g0263 K11644 - gmx:100811928 2399.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g0263 11 2167199 2178888 Aed11g0263 11 2167199 2178888 ECH
Aed11g0263 11 2167199 2178888 Aed7g1702 7 20409804 20417007 PCT