Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g0258 ATGAACGACCTATTCTCAAGCTCCTTCAAAAAATATAGTGACATGAAAGGGCAGTTCCAATTGGATGATGTGGAGACCAGGAGGGAAAGTGTGAACCTTGATAAATTCTTCGACGAGGTGGAGAATGTGAAAGAAGACATGAGACTAGTTGAGAAGCTCTATAGGAAATTGCAAGAGTCAAATGAAGAGAGCAAAATCGTTCACGATGCTAAAACAATGAAGGATGTTCGAGTCAGGATGGACCAAGATGTTAATCAGGTCCTGAAACAAGTGAAACTCATAAAGGGGAAGCTTGAATCTTTAGAACGTTCGAATGCAGCAAACAGAAACCTTCCAGGGTGTGGTCCAGGTTCCTCGGCAGACAGAACAAGAACCTCAGTGGTTAGTGGCTTAGGGAAGAAACTGAAGGACTTGATGGACGATTTCCAAGGGTTGAGGGCGATAATGCAGAACGAGTACAAGGAAACGGTTGAACGAAGGTACTTCACTATCACAGGAGAAAAGGCTGATGAAGACACCATAGAGAACTTGATATCAAGTGGTGAAAGTGAGAGTTTTCTTCAGAGGGCGATTCAGGAACAAGGGAGGGGTCAGATAATGGACACCATTTCGGAGATTCAAGAAAGACATGATTCTGTTAAGGAGATTGAGAAGAGCTTGATTGAGTTGCATCAGGTTTTTTTGGACATGGCAGCACTTGTTGAGTCTCAGGGTCAACAACTTAACAACATAGAGAGTCATGTTGCACATGCAAGTTCTTTTGTCAGAAGAGGCACTGAACAACTTCAGGAAGCCAGACATATTCAAAAGGACTCCAGAAAGTGGACTTGTTATGCCATTATTCTTGGCATTGTACTCATTATTGTCCTCCTACTTCCTCTCTTGTCAGCACTTTTACCTCACATGTTGTTTTGA 915 0.4262 MNDLFSSSFKKYSDMKGQFQLDDVETRRESVNLDKFFDEVENVKEDMRLVEKLYRKLQESNEESKIVHDAKTMKDVRVRMDQDVNQVLKQVKLIKGKLESLERSNAANRNLPGCGPGSSADRTRTSVVSGLGKKLKDLMDDFQGLRAIMQNEYKETVERRYFTITGEKADEDTIENLISSGESESFLQRAIQEQGRGQIMDTISEIQERHDSVKEIEKSLIELHQVFLDMAALVESQGQQLNNIESHVAHASSFVRRGTEQLQEARHIQKDSRKWTCYAIILGIVLIIVLLLPLLSALLPHMLF 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g0258 304 Pfam Syntaxin 35 238 IPR006011 GO:0016020
Aed11g0258 304 Gene3D - 194 295 - -
Aed11g0258 304 CDD SNARE_syntaxin1-like 202 264 - -
Aed11g0258 304 Pfam SNARE domain 240 291 IPR000727 -
Aed11g0258 304 ProSitePatterns Syntaxin / epimorphin family signature. 209 248 IPR006012 GO:0005484|GO:0006886|GO:0016020
Aed11g0258 304 Coils Coil 84 104 - -
Aed11g0258 304 Gene3D - 33 160 - -
Aed11g0258 304 CDD SynN 33 190 IPR006011 GO:0016020
Aed11g0258 304 PANTHER SYNTAXIN 7 295 IPR045242 -
Aed11g0258 304 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 203 265 IPR000727 -
Aed11g0258 304 Coils Coil 40 63 - -
Aed11g0258 304 PANTHER SYNTAXIN-124-RELATED 7 295 - -
Aed11g0258 304 SMART SynN_4 28 154 IPR006011 GO:0016020
Aed11g0258 304 SUPERFAMILY t-snare proteins 32 258 IPR010989 GO:0016020|GO:0016192
Aed11g0258 304 SMART tSNARE_6 198 265 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g0258 Aed-Chr11 2137446 2138360 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g0258 1 304 SNARE and Associated Proteins AT1G61290 74.671 9.96e-171 473
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g0258 K08486 - gmx:100818999 505.368