Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g0243 ATGAGTTCATCCTCAGAGAATAAAACTAATTCCTCTCCTTCTCCTTCAGAGTTGAAACTATTCGGTTTCCCTTTGAGGGCTACGACCAGCGACAACGACAGTGATGGCCGGAGTAATAAGAAGATCGAGTGTCCATACTGCCATCGCGAATTTCAGAATATGCAAGCGTTGGGGGGCCACCAAAATGCACATAAAAGAGAAAGACAAATGGCTAGGTGGGCCCAATTTGAATATAATATGTATCTACATCAAAGAAACCAACTATTTTCGGTGGTTGCACAATTAGGAGCTGCACCAACCTCTGTTTTCGGTGGTGCAACTCAGTTCTGGACAGCACAGGTTCCAGTACAAAAGCTAGGTACGCACCAACATAACGTTCCGCCTGTTGCAGGGGTTGATGATAATAATATCGATCTAGAACTAAGACTAGGTAATTCTTCTAAGGAATTTGGGATGTGA 459 0.4357 MSSSSENKTNSSPSPSELKLFGFPLRATTSDNDSDGRSNKKIECPYCHREFQNMQALGGHQNAHKRERQMARWAQFEYNMYLHQRNQLFSVVAQLGAAPTSVFGGATQFWTAQVPVQKLGTHQHNVPPVAGVDDNNIDLELRLGNSSKEFGM 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g0243 152 Pfam C2H2-type zinc finger 43 66 - -
Aed11g0243 152 PANTHER ZINC FINGER PROTEIN 5 3 98 IPR044299 GO:0010090
Aed11g0243 152 ProSiteProfiles Zinc finger C2H2 type domain profile. 42 69 IPR013087 -
Aed11g0243 152 ProSitePatterns Zinc finger C2H2 type domain signature. 44 64 IPR013087 -
Aed11g0243 152 MobiDBLite consensus disorder prediction 1 17 - -
Aed11g0243 152 MobiDBLite consensus disorder prediction 1 39 - -
Aed11g0243 152 PANTHER ZINC FINGER PROTEIN 6-LIKE 3 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g0243 Aed-Chr11 2043140 2043598 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g0243 43 144 C2H2 Transcription Factor Family AT5G43540 36.190 1.70e-15 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g0243 - - pvu:PHAVU_002G076300g 166.392