Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g0241 ATGGAAAAGGATAACATTGATCTTTCTCCAACATGGGATAGTACTGAGAATGGAAATTCTACTGAGAAAAGGCTCAGGCTTTTTGGCTTTGAGCTAAACCCTTCTAAAGAGGGTAATTGTGTCAAAGAATCTGGTGAATTAGGAGATGAAAGTGTGAACTCCTCTAACTCAGTCTCATCAGGGGGAGACAAAACTGTGCAAGAGAAAACCTCAGCCAACAAGGACCCTGATGAGAGAAAATTTGAGTGTCAATACTGTTACAAAGAATTTGCAAATTCACAAGCCCTAGGTGGCCACCAAAATGCTCACAAGAAAGAGAGAATGAAGAAGAAGAGGTTGCAGCTTCAATCCATAAACCGTTACCTACAACACCCTTTCCAATCAAACCATGCCTTTGTTTACCCCTCTGATACTCCTTGGTTCTATGACCCCTCTACCTATAACAACAACAACTCTGAGTTCACCCTTTGTGAAGAGCCTCAGATTAGCTTCAATTCAAATGTTTTAGATACCAACAACAGCAACTTTTCTTGTGACCAGAAATCTAGAAATTGGTATTCTCTTGCATCTCACCCTTCTAATAGTTCCCAACAAGAAGATACTTCTTGCATGTTTACTTTCTCCAATGCTAGTAATAATAATAGTCCTTTCATCTTCAAGCCTTGCCACTTTCCTGCTTCAAATCAGAGCCATGGTAAAGCCCTAGATCTTCAACTAGGCCTCAACTTGCAGGCAAATACAAGAAGTTCTATGAGAAGGATGTAA 765 0.4013 MEKDNIDLSPTWDSTENGNSTEKRLRLFGFELNPSKEGNCVKESGELGDESVNSSNSVSSGGDKTVQEKTSANKDPDERKFECQYCYKEFANSQALGGHQNAHKKERMKKKRLQLQSINRYLQHPFQSNHAFVYPSDTPWFYDPSTYNNNNSEFTLCEEPQISFNSNVLDTNNSNFSCDQKSRNWYSLASHPSNSSQQEDTSCMFTFSNASNNNSPFIFKPCHFPASNQSHGKALDLQLGLNLQANTRSSMRRM 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g0241 254 Pfam C2H2-type zinc finger 81 106 - -
Aed11g0241 254 MobiDBLite consensus disorder prediction 1 20 - -
Aed11g0241 254 Gene3D Classic Zinc Finger 54 131 - -
Aed11g0241 254 PANTHER ZINC FINGER PROTEIN 5 14 244 IPR044299 GO:0010090
Aed11g0241 254 ProSitePatterns Zinc finger C2H2 type domain signature. 83 103 IPR013087 -
Aed11g0241 254 ProSiteProfiles Zinc finger C2H2 type domain profile. 81 108 IPR013087 -
Aed11g0241 254 PANTHER ZINC FINGER PROTEIN 5 14 244 - -
Aed11g0241 254 MobiDBLite consensus disorder prediction 48 67 - -
Aed11g0241 254 SUPERFAMILY beta-beta-alpha zinc fingers 77 108 IPR036236 -
Aed11g0241 254 MobiDBLite consensus disorder prediction 34 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g0241 Aed-Chr11 2007598 2008362 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g0241 78 144 C2H2 Transcription Factor Family AT1G68360 45.556 1.19e-16 75.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed11g0241 zf-C2H2_6 7e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g0241 - - gmx:100799857 410.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g0241 11 2007598 2008362 Aed11g0241 11 2007598 2008362 ECH