Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g0240 ATGCCGGGGCACCGCTCGAAGTCGGAGAAGCACCACGACGACGACGGCGGCGGCGGCGAGAAGCAGCTCCGGCGAGACCCCTACGAGGTCCTCAGCGTCTCGCGCAACTCCACGGATCAGGAAATCAAATCCGCCTACCGCAAAATGGCGCTCAAATATCATCCGGACAAGAATGCTAATGATCCTAAAGCAGCTGATATGTTTAAAGAGGTCACCTTTTCTTACAACATTCTGTCAGATCCTGACAAGCGACGTCAGTACGACTCAGCTGGCTTTGAGGCTGTTGAATCAGACAACCAAGAGTTGGAGTTAGATCTTTCAAGTTTGGGTGCTGTCAATACAATGTTTGCAGCACTTTTTAGTAAACTTGGTGTGCCAATTAAGACAACTGTATCTGCAACTGTTTTGGAAGAGGCACTCAATGGTGTAGTGCCCATTCGTTCACTTCCATTGGGACATTGTATATCTAAAAGGGTTGAGAAGCAATGTGCGCACTTCTATTCCGTTTCAATAACAGAAGAGGAAGCACGAGCTGGATTTGTTTGTCGAGTACAATCGTCGGACAAAAGCAAGTTCAAGTTATTGTATTTTGATCGGGAAGACAGCAGTGGTTTAAGCCTTGCACTCCAGGAAGACAGTGCAAAAACAGGGAAGGTTACCTCTGCTGGGATGTATTTTCTTGGGTTTCCTGTTTATCGATTAGATCAAACAATGAACTCTATAGCTGCTGCTAAGGATCCAGATACATCATTTTTCAGAAAGCTAGATGGGTTTCAGCCCTGTGAATTAACAGAATTGAAGGCTGGTATCCATGTATTTGCTGTTTATGGTGACAACTTCTTCAAAAGTGCAAACTATACAATAGAGGCCCTTTGTGCTGCACCTTTTAGTGAAGAAAAAGAAAATTTAAGAAATATAGAAGGTCAAATTTTATCTAAAAGGGCAGAAATATCAAAGTTTGAGGCAGAATATCGAGAGGTTTTGGCACAATTCTCAGAGATGACAAGCAGATATGCACATGAAATGCAAACAATTGACGAGCTACTGAAGAATAGAAATGAAATACATGCATCATACACTAGTGCTCCTTTAAAACGGAGTACGAGTAGGAGCAGAAGTAAAAATTCTTCCAAGGAGGCAAAAGAAGATGATGGCCAAGGCGGCCAAGGCCAAGCCCAAGCAAAGGAAAAGAGGAGTACAAGAGAACGGCCAAAGAAGAAGAAATGGTATAACCTCCACTTGAGAGTTGATAAGAGAAAGGCTTGCTAA 1269 0.4342 MPGHRSKSEKHHDDDGGGGEKQLRRDPYEVLSVSRNSTDQEIKSAYRKMALKYHPDKNANDPKAADMFKEVTFSYNILSDPDKRRQYDSAGFEAVESDNQELELDLSSLGAVNTMFAALFSKLGVPIKTTVSATVLEEALNGVVPIRSLPLGHCISKRVEKQCAHFYSVSITEEEARAGFVCRVQSSDKSKFKLLYFDREDSSGLSLALQEDSAKTGKVTSAGMYFLGFPVYRLDQTMNSIAAAKDPDTSFFRKLDGFQPCELTELKAGIHVFAVYGDNFFKSANYTIEALCAAPFSEEKENLRNIEGQILSKRAEISKFEAEYREVLAQFSEMTSRYAHEMQTIDELLKNRNEIHASYTSAPLKRSTSRSRSKNSSKEAKEDDGQGGQGQAQAKEKRSTRERPKKKKWYNLHLRVDKRKAC 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g0240 422 CDD DnaJ 26 80 IPR001623 -
Aed11g0240 422 Coils Coil 303 323 - -
Aed11g0240 422 SUPERFAMILY Chaperone J-domain 25 95 IPR036869 -
Aed11g0240 422 SMART dnaj_3 25 83 IPR001623 -
Aed11g0240 422 Pfam DnaJ domain 26 88 IPR001623 -
Aed11g0240 422 ProSiteProfiles dnaJ domain profile. 26 91 IPR001623 -
Aed11g0240 422 ProSitePatterns Nt-dnaJ domain signature. 68 87 IPR018253 -
Aed11g0240 422 MobiDBLite consensus disorder prediction 1 28 - -
Aed11g0240 422 PANTHER CHAPERONE PROTEIN DNAJ 16 1 422 - -
Aed11g0240 422 PRINTS DnaJ domain signature 63 83 IPR001623 -
Aed11g0240 422 PRINTS DnaJ domain signature 46 61 IPR001623 -
Aed11g0240 422 PRINTS DnaJ domain signature 83 102 IPR001623 -
Aed11g0240 422 PRINTS DnaJ domain signature 28 46 IPR001623 -
Aed11g0240 422 MobiDBLite consensus disorder prediction 1 36 - -
Aed11g0240 422 MobiDBLite consensus disorder prediction 359 422 - -
Aed11g0240 422 Gene3D DnaJ domain 10 109 IPR036869 -
Aed11g0240 422 MobiDBLite consensus disorder prediction 400 414 - -
Aed11g0240 422 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN) 1 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g0240 Aed-Chr11 1990035 1994648 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g0240 24 89 C2H2 Transcription Factor Family AT1G74250 42.254 2.04e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g0240 - - gmx:100800929 749.969
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g0240 11 1990035 1994648 Aed11g0240 11 1990035 1994648 ECH