Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g0234 ATGTCGGTCTCCTGCTCCAACTGCTTCCCCGACGACTCCTCCCTCCTCTGTGGCGAGGACTCCTCCGGAATCCTCTCCGTAGACTCCCCGGAGTGCTCCTCCGACCTAGATTCCCCGCCGCCATCGGAGGCGGAGTCCATCGCCGGATTCATCGAAGACGAGCGCAACTTCGTCCCCGGATTCGAGTACCTCAACAGGTTCCAGTCTCGTTCTCTCGACGCCTCCGCCAGAGAAGAATCCGTTGCATGGATTCTCAAGGTGCAGGCTTATTACGCTTTTGAACCGCTCACGGCTTATCTTTCCGTTAACTACATGGATCGGTTCTTAAATTCTCGGCCGTTGCCGCAAACGAGTGGGTGGCCACTGCAACTTCTCTCTGTTGCGTGCTTGTCTTTAGCTGCAAAGATGGAGGAACCTCTAGTTCCGTCTCTGTTGGACCTTCAGGTAGAAGGTGCAAAATACGTATTTGAACCCAGAACAATTAGAAGAATGGAACTACTTGTTCTGGGCGTCTTGGATTGGAGGCTAAGATCGGTTACCCCATTTAGCTTCCTTGATTTCTTTGCGTGCAAGTTAAATTCATCTGGAACTTTTACCGGGTTCCTCATTTCACGTGCTACACAAATTATCTTATCTAATATCCAAGAGGCTAGCTTTCTTGCGTATTGGCCATCGTGCATTGCTGCAGCAGCCATTCTTCACGCAGCTAACGAAATTCCTAATTGGTCTCTCGTTAGGCCTGAGCATGCCGAGTCATGGTGTGAGGGGTTAAGAAAGGAGAAAATTATAGGATGCTACCAATTAATGCAAGAACTTGTGATTGACAATAACCAGAGGAAACCCCCTAAAGTGTTACCACAGCTGCGAGTGACATCTCGGCCCATTATAAGGTCAAGTGTCTCATCATTCTCAGCATCATCATCCTCTTCTCCTTCATCCTCATTGTCTTGTAAAAGGAGGAAATTAAATAACTGTTTGTGGGTAGAGGATGACAAAGGAAACACCCGGTGA 1011 0.4866 MSVSCSNCFPDDSSLLCGEDSSGILSVDSPECSSDLDSPPPSEAESIAGFIEDERNFVPGFEYLNRFQSRSLDASAREESVAWILKVQAYYAFEPLTAYLSVNYMDRFLNSRPLPQTSGWPLQLLSVACLSLAAKMEEPLVPSLLDLQVEGAKYVFEPRTIRRMELLVLGVLDWRLRSVTPFSFLDFFACKLNSSGTFTGFLISRATQIILSNIQEASFLAYWPSCIAAAAILHAANEIPNWSLVRPEHAESWCEGLRKEKIIGCYQLMQELVIDNNQRKPPKVLPQLRVTSRPIIRSSVSSFSASSSSSPSSSLSCKRRKLNNCLWVEDDKGNTR 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g0234 336 Pfam Cyclin, N-terminal domain 49 176 IPR006671 -
Aed11g0234 336 SUPERFAMILY Cyclin-like 41 176 IPR036915 -
Aed11g0234 336 SUPERFAMILY Cyclin-like 161 282 IPR036915 -
Aed11g0234 336 Gene3D - 60 177 - -
Aed11g0234 336 PANTHER CYCLINS 1 326 IPR039361 -
Aed11g0234 336 Gene3D - 51 240 - -
Aed11g0234 336 CDD CYCLIN 83 169 IPR013763 -
Aed11g0234 336 Pfam Cyclin, C-terminal domain 179 287 IPR004367 -
Aed11g0234 336 ProSitePatterns Cyclins signature. 77 108 IPR006671 -
Aed11g0234 336 PANTHER CARBOXY-TERMINAL DOMAIN CYCLIN 1 326 - -
Aed11g0234 336 SMART Cyclin_C_2 179 312 IPR004367 -
Aed11g0234 336 SMART cyclin_7 82 170 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g0234 Aed-Chr11 1934558 1939670 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g0234 1 335 Core Cell Cycle Gene Families AT1G70210 63.717 1.04e-138 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g0234 K18810 - gmx:100775224 584.334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g0234 11 1934558 1939670 Aed1g1951 1 16617041 16618896 ECH
Aed11g0234 11 1934558 1939670 Aed11g0234 11 1934558 1939670 ECH
Aed11g0234 11 1934558 1939670 Aed7g1684 7 20189599 20195316 PCT