Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g0162 ATGCATATGAATGGATTCAGAGCAAGGGCTTTTCTGCGCTCAATCTCATTTTGTAAATCAAAGTGGCATCATCACCATGTCCATGAAGGTCAAATCCATTTCTCTCAAAATCTCACCACCTCCACAGCAGGTCCTGAGTTTATGGAACTGTCTATTCAGAGGCAGAGGCAAGTTGTCGAGGCACTCAGCTTGGGTGACAGAAAGAAGGCTTCAGACTTACTTTCGGATTTTGGTTCCAGAAGCCACTCATTAACAGCTGATGATTTTGTTCATGTTTTTAAGTTCTGCGCACGCTCTCCTGATCCTATGTTTGTTATGGAGATTTGGAGATTCATGGAGTTAAAAGGTGTTGGCATGAACAATATATGCTCATTTCTTATGATGCAGGCCCTTTGTAATGGGGGTTACTTGGAAGAGGCCTTTGACATCGTGGATTATCTTGGAGGGAGTCAATGTCTCTATCCAGTTCTCCCACTGTACAATAGTCTCTTAAGATCATGCACAGAAATGCAGAATATAATTCAAGCAAGCAGATGTTTGGAGTTAATGGAAAAGAAGATGGTAGGGAAGAATGAAGTTACATATACTGAGCTTCTCAAGCTTGCAGTTTTGCAGAAAAACTTGCCTACAGCCCATCTCATTTGGCAGGAGTATATTAAAAACTATAGCATGAGTATCATTGCTCTGGATAGATTCATTTGGTCATTTACAAGGTTAGGAGATTTAGAATCTGCATATAAAATACTACTACAAATGGTGTCATTAGCCATCAGGGGAAACATTTCTATTGCTAGAACAGTTTATGGGAAGTTGGATTCTACTAGACTGGACATCCCTGTGCCTTCAAATAAGGGTCTAAGCTCAACCATATTGGACTTGAATGACAACAAAAATTTGGACTCTTGTATACACTCTCGTCTCATGTACATACCTGACAGTATTTCTGCAAGTATAGAGCAACAAATTATTTGTATGGGGAATAAAAAAGCTAAGAGTACTGAATTATCTGGGCTGAATGGACAAAAACACCCACTGCTTAAGATGGCGTTGAGGTGGTCCTTTAATGATATAATACATGGGTGTGCAAAACAAGAAAATCATATGCTTGCAAGGAAGCTTATGTTACAGATGAATAATCTTGGTTTGCAGCCATCCAGACATACATATAATGGCATTATTAAAGTTGTTTCTCAGAGAAGTTTTGGGGATGCAATAAGAGTGTTGAAAAAGATGCAGCAGAAGAATTTGAAGCCATATGATTCAACTCTAGCAACACTTTCAATCACTTGCAGCAAAGCACTACAACTAGATTTAGCTGAGGCTTTTCTGAATCAGATTTCTGAATGTCTATATCCACATCCTTATAATGTTTTGCTAGCATCATGCAATCAACTGAATCAGCCTGAACGTGCTATGCGAGTGACATGCGAGCTTCTACTTTCATTATTTGGTGTTGTAAATGCCCATTATGAAGACTGTAATATGCAGTCACAGGTGGATGCTGCTAAAAGAATAAATGCTATAGAAAAGTATATGGCCAAAAATGGCATTCAGCATAGTCACATTTCAATGAATAATATATTAGCCACTGGGAAGATCGTCGCTCTGAAGAAGACTCGTCTCCACGAGGACGAAGAAGGTGTCCCTCCCACCACTCTCCGCGAGGTTTCCATTCTGCAAATGCTCTCTCGCGATCCTCATGTCGTCAGGTTGATGGGTCAGAACAAGGAAGGGAAGACAGTGCTCTACTTGGTATTTGAGTACATGGATACTGATCTCAAGAAATTCATTCGCTCTTTCCGTCAAACCGGAGAAACCATTCCACCCCAAACCATTAAAAGCTTGATGTACCAGCTTTGCAAGGGTGTTGCTTTCTGCCACGGTCATGGGATATTACACAGGGACTTGAAGCCTCACAATCTCTTGATGGACCGAAAAACAATGATGCTTAAAATTGCTGATCTCGGACTCGCTCGAGCATTTACTGTGCCAATTAAGAAATATACACACGAGATACTAACCCTGTGGTATAGAGCTCCTGAAGTCCTCTTGGGTGCTACCCATTACTCTATGGCGGTAGACATATGGTCGGTTGCCTGCATATTTGCCGAACTTGTCACTAAACAAGCACTCTTTGCTGGTGATTCCGAGCTGCAACAACTCCTGCATATATTCAGGCTATTGGGAACTCCTAATGAAGAGGTGTGGCCTGGCGTGAGTAAACTAATGAACTGGCATGAATATCCTCAATGGAACCCCCAAAGTCTGTCAAAAGCTGTTCCAAGTTTGGATGAGCTTGGACTGGATTTGCTATCTCAAATGTTGAATTATGAACCTTCCAAGCGGATTTCTGCAAAGAAAGCAATGGAACATGCATACTTCGATGACCTAGACAAGAGTCTCAACCTACTCTAG 2415 0.412 MHMNGFRARAFLRSISFCKSKWHHHHVHEGQIHFSQNLTTSTAGPEFMELSIQRQRQVVEALSLGDRKKASDLLSDFGSRSHSLTADDFVHVFKFCARSPDPMFVMEIWRFMELKGVGMNNICSFLMMQALCNGGYLEEAFDIVDYLGGSQCLYPVLPLYNSLLRSCTEMQNIIQASRCLELMEKKMVGKNEVTYTELLKLAVLQKNLPTAHLIWQEYIKNYSMSIIALDRFIWSFTRLGDLESAYKILLQMVSLAIRGNISIARTVYGKLDSTRLDIPVPSNKGLSSTILDLNDNKNLDSCIHSRLMYIPDSISASIEQQIICMGNKKAKSTELSGLNGQKHPLLKMALRWSFNDIIHGCAKQENHMLARKLMLQMNNLGLQPSRHTYNGIIKVVSQRSFGDAIRVLKKMQQKNLKPYDSTLATLSITCSKALQLDLAEAFLNQISECLYPHPYNVLLASCNQLNQPERAMRVTCELLLSLFGVVNAHYEDCNMQSQVDAAKRINAIEKYMAKNGIQHSHISMNNILATGKIVALKKTRLHEDEEGVPPTTLREVSILQMLSRDPHVVRLMGQNKEGKTVLYLVFEYMDTDLKKFIRSFRQTGETIPPQTIKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMMLKIADLGLARAFTVPIKKYTHEILTLWYRAPEVLLGATHYSMAVDIWSVACIFAELVTKQALFAGDSELQQLLHIFRLLGTPNEEVWPGVSKLMNWHEYPQWNPQSLSKAVPSLDELGLDLLSQMLNYEPSKRISAKKAMEHAYFDDLDKSLNLL 804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g0162 804 SMART serkin_6 505 794 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed11g0162 804 Gene3D Transferase(Phosphotransferase) domain 1 592 803 - -
Aed11g0162 804 SUPERFAMILY Protein kinase-like (PK-like) 528 797 IPR011009 -
Aed11g0162 804 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1 528 - -
Aed11g0162 804 Gene3D Phosphorylase Kinase; domain 1 526 590 - -
Aed11g0162 804 Pfam PPR repeat 127 145 IPR002885 -
Aed11g0162 804 ProSitePatterns Serine/Threonine protein kinases active-site signature. 631 643 IPR008271 GO:0004672|GO:0006468
Aed11g0162 804 Pfam Protein kinase domain 529 794 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed11g0162 804 Gene3D Tetratricopeptide repeat domain 350 464 IPR011990 GO:0005515
Aed11g0162 804 Gene3D Tetratricopeptide repeat domain 56 229 IPR011990 GO:0005515
Aed11g0162 804 ProSiteProfiles Protein kinase domain profile. 506 794 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed11g0162 804 Pfam Pentatricopeptide repeat domain 354 397 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g0162 Aed-Chr11 1277422 1293959 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g0162 529 800 Core Cell Cycle Gene Families AT1G20930 85.199 2.43e-172 497
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-Pl Aed11g0162 Pkinase 3.2e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g0162 - K07760 gmx:100780147 872.848